From 8aa2a74437ebec44ac4946abcb1bb2b25ab6f8e2 Mon Sep 17 00:00:00 2001 From: Neil Horner Date: Wed, 4 Oct 2023 17:23:33 +0000 Subject: [PATCH] Container pychop 2.7.9 --- README.md | 1 + docs/quickstart.md | 1 + 2 files changed, 2 insertions(+) diff --git a/README.md b/README.md index 35284c9..de23b17 100644 --- a/README.md +++ b/README.md @@ -142,6 +142,7 @@ Pychopper and minimap2 can take options via `--minimap2_opts` and `--pychopper_o - SQK-PCS109: `--pychopper_opts '-k PCS109'` (default) - SQK-PCS110: `--pychopper_opts '-k PCS110'` - SQK-PCS111: `--pychopper_opts '-k PCS111'` + - SQK-LSK114: `--pychopper_opts '-k LSK114'` - pychopper can use one of two available backends for identifying primers in the raw reads - nhmmscan `--pychopper opts '-m phmm'` - edlib `--pychopper opts '-m edlib'` diff --git a/docs/quickstart.md b/docs/quickstart.md index 0a33df2..a008dea 100644 --- a/docs/quickstart.md +++ b/docs/quickstart.md @@ -67,6 +67,7 @@ Pychopper and minimap2 can take options via `--minimap2_opts` and `--pychopper_o - SQK-PCS109: `--pychopper_opts '-k PCS109'` (default) - SQK-PCS110: `--pychopper_opts '-k PCS110'` - SQK-PCS111: `--pychopper_opts '-k PCS111'` + - SQK-LSK114: `--pychopper_opts '-k LSK114'` - pychopper can use one of two available backends for identifying primers in the raw reads - nhmmscan `--pychopper opts '-m phmm'` - edlib `--pychopper opts '-m edlib'`