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Kiah McIntosh 2026-05-14 10:50:18 +00:00
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README.md
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@ -29,6 +29,11 @@ together. The workflow also produces separate per-sample transcriptomes, so
each sample has its own GTF, FASTA, count tables, and optional `SQANTI3`
summary alongside the shared results.
<figure>
<img src="docs/images/wf-transcriptomes.drawio.svg" alt="wf-transcriptomes overview schematic."/>
<figcaption>Schematic depicting wf-transcriptomes workflow.</figcaption>
</figure>
For users familiar with earlier transcriptome workflows, the main change is
that transcript discovery, quantification, and optional differential analysis
now use the shared `bambu` outputs rather than the older

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docs/02_introduction.md
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@ -21,6 +21,11 @@ together. The workflow also produces separate per-sample transcriptomes, so
each sample has its own GTF, FASTA, count tables, and optional `SQANTI3`
summary alongside the shared results.
<figure>
<img src="docs/images/wf-transcriptomes.drawio.svg" alt="wf-transcriptomes overview schematic."/>
<figcaption>Schematic depicting wf-transcriptomes workflow.</figcaption>
</figure>
For users familiar with earlier transcriptome workflows, the main change is
that transcript discovery, quantification, and optional differential analysis
now use the shared `bambu` outputs rather than the older

4
docs/images/wf-transcriptomes.drawio.svg Normal file
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