From 30a9880bf72665abc355a6b4088de0f03026cf27 Mon Sep 17 00:00:00 2001
From: Sarah Griffiths <sarah.griffiths@nanoporetech.com>
Date: Thu, 28 May 2026 07:15:20 +0000
Subject: [PATCH] Remove demo data to avoid breaking production demo

---
 README.md                  | 18 ------------------
 docs/04_install_and_run.md | 18 ------------------
 nextflow_schema.json       |  2 --
 3 files changed, 38 deletions(-)

diff --git a/README.md b/README.md
index 890a19a..979e834 100644
--- a/README.md
+++ b/README.md
@@ -108,24 +108,6 @@ the following command:
 nextflow pull epi2me-labs/wf-transcriptomes
 ```
 
-A demo dataset is provided for testing of the workflow.
-It can be downloaded and unpacked using the following commands:
-```
-wget https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-transcriptomes/wf-transcriptomes-demo.tar.gz
-tar -xzvf wf-transcriptomes-demo.tar.gz
-```
-The workflow can then be run with the downloaded demo data using:
-```
-nextflow run epi2me-labs/wf-transcriptomes \
-	--de_analysis \
-	--direct_rna \
-	--fastq 'wf-transcriptomes-demo/differential_expression_fastq' \
-	--ref_annotation 'wf-transcriptomes-demo/gencode.v22.annotation.chr20.gtf' \
-	--ref_genome 'wf-transcriptomes-demo/hg38_chr20.fa' \
-	--sample_sheet 'wf-transcriptomes-demo/sample_sheet.csv' \
-	-profile standard
-```
-
 
 
 
diff --git a/docs/04_install_and_run.md b/docs/04_install_and_run.md
index af11d26..f6995b4 100644
--- a/docs/04_install_and_run.md
+++ b/docs/04_install_and_run.md
@@ -37,21 +37,3 @@ the following command:
 ```
 nextflow pull epi2me-labs/wf-transcriptomes
 ```
-
-A demo dataset is provided for testing of the workflow.
-It can be downloaded and unpacked using the following commands:
-```
-wget https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-transcriptomes/wf-transcriptomes-demo.tar.gz
-tar -xzvf wf-transcriptomes-demo.tar.gz
-```
-The workflow can then be run with the downloaded demo data using:
-```
-nextflow run epi2me-labs/wf-transcriptomes \
-	--de_analysis \
-	--direct_rna \
-	--fastq 'wf-transcriptomes-demo/differential_expression_fastq' \
-	--ref_annotation 'wf-transcriptomes-demo/gencode.v22.annotation.chr20.gtf' \
-	--ref_genome 'wf-transcriptomes-demo/hg38_chr20.fa' \
-	--sample_sheet 'wf-transcriptomes-demo/sample_sheet.csv' \
-	-profile standard
-```
diff --git a/nextflow_schema.json b/nextflow_schema.json
index 723f982..7dc84c8 100644
--- a/nextflow_schema.json
+++ b/nextflow_schema.json
@@ -4,8 +4,6 @@
   "title": "epi2me-labs/wf-transcriptomes",
   "workflow_title": "Transcriptomes",
   "description": "Long-read transcriptome analysis using bambu with optional SQANTI3 QC, DESeq2, and DEXSeq.",
-  "demo_url": "https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-transcriptomes/wf-transcriptomes-demo.tar.gz",
-  "aws_demo_url": "https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-transcriptomes/wf-transcriptomes-demo/aws.nextflow.config",
   "url": "https://github.com/epi2me-labs/wf-transcriptomes",
   "type": "object",
   "definitions": {