From f86b74a494f557d06dc04be5d5fbb5af4ee341be Mon Sep 17 00:00:00 2001 From: Sarah Griffiths Date: Wed, 12 Jul 2023 11:05:34 +0000 Subject: [PATCH] CW-2217 fix ordering of sample_ids --- CHANGELOG.md | 3 ++- bin/workflow_glue/report.py | 1 + 2 files changed, 3 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index d592e2e..e04b3f6 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -12,7 +12,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - Values for the condition may be any two distinct strings, for example: treated/untreated; sample/control etc. ### Fixed -- Remove default of null for `--ref_transcriptome` +- Remove default of null for `--ref_transcriptome`. +- Read mapping summary table in the report has correct sample_ids. ## [v0.1.13] ### Added diff --git a/bin/workflow_glue/report.py b/bin/workflow_glue/report.py index b04ae6c..88c75ed 100755 --- a/bin/workflow_glue/report.py +++ b/bin/workflow_glue/report.py @@ -901,6 +901,7 @@ def de_section(report): def main(args): """Run the entry point.""" sample_ids = args.sample_ids + sample_ids.sort() report = WFReport( "Transcript isoform report", "wf-transcriptomes",