CW-2754-dead-links-readme
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The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
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and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
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## [unreleased]
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- Remove dead links from README
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## [v0.3.1]
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### Added
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- Handling for input reference transcriptome headers that contain `|`
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This repository contains a [nextflow](https://www.nextflow.io/) workflow
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for assembly and annotation of transcripts from Oxford Nanopore cDNA or direct RNA reads.
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It has been adapted from two existing Snakemake pipelines:
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* https://github.com/nanoporetech/pipeline-nanopore-ref-isoforms
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* https://github.com/nanoporetech/pipeline-nanopore-denovo-isoforms
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This repository contains a [nextflow](https://www.nextflow.io/) workflow
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for assembly and annotation of transcripts from Oxford Nanopore cDNA or direct RNA reads.
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It has been adapted from two existing Snakemake pipelines:
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* https://github.com/nanoporetech/pipeline-nanopore-ref-isoforms
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* https://github.com/nanoporetech/pipeline-nanopore-denovo-isoforms
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