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CW-2754-dead-links-readme

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Matt Parker 2023-09-12 14:26:03 +01:00
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CHANGELOG.md
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@ -4,6 +4,9 @@ All notable changes to this project will be documented in this file.
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/), The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
## [unreleased]
- Remove dead links from README
## [v0.3.1] ## [v0.3.1]
### Added ### Added
- Handling for input reference transcriptome headers that contain `|` - Handling for input reference transcriptome headers that contain `|`

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README.md
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This repository contains a [nextflow](https://www.nextflow.io/) workflow This repository contains a [nextflow](https://www.nextflow.io/) workflow
for assembly and annotation of transcripts from Oxford Nanopore cDNA or direct RNA reads. for assembly and annotation of transcripts from Oxford Nanopore cDNA or direct RNA reads.
It has been adapted from two existing Snakemake pipelines:
* https://github.com/nanoporetech/pipeline-nanopore-ref-isoforms
* https://github.com/nanoporetech/pipeline-nanopore-denovo-isoforms

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docs/header.md
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This repository contains a [nextflow](https://www.nextflow.io/) workflow This repository contains a [nextflow](https://www.nextflow.io/) workflow
for assembly and annotation of transcripts from Oxford Nanopore cDNA or direct RNA reads. for assembly and annotation of transcripts from Oxford Nanopore cDNA or direct RNA reads.
It has been adapted from two existing Snakemake pipelines:
* https://github.com/nanoporetech/pipeline-nanopore-ref-isoforms
* https://github.com/nanoporetech/pipeline-nanopore-denovo-isoforms