kfukuta/wf-transcriptomes-v202
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Merge branch 'cw-4886' into 'dev'

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Output dtu_plots to local work dir then mv [CW-4886]

See merge request epi2melabs/workflows/wf-transcriptomes!182
This commit is contained in:
Sam Nicholls 2024-09-09 18:41:18 +00:00
commit 31085d0fe4
2 changed files with 3 additions and 1 deletions
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2
bin/plot_dtu_results.R
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@ -44,7 +44,7 @@ sig_level <- 0.05
genes <- as.character(tdf[which(tdf$p_gene < sig_level),]$gene_id) genes <- as.character(tdf[which(tdf$p_gene < sig_level),]$gene_id)
genes <- unique(genes) genes <- unique(genes)
pdf("de_analysis/dtu_plots.pdf") pdf("dtu_plots.pdf")
for(gene in genes){ for(gene in genes){
gdf<-tdf[which(tdf$gene_id==gene),] gdf<-tdf[which(tdf$gene_id==gene),]

2
subworkflows/differential_expression.nf
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@ -106,6 +106,8 @@ process plotResults {
path "de_analysis/results_dtu.pdf", emit: dtu_pdf path "de_analysis/results_dtu.pdf", emit: dtu_pdf
""" """
plot_dtu_results.R plot_dtu_results.R
# output plots to common analysis output directory
mv dtu_plots.pdf de_analysis/dtu_plots.pdf
""" """
} }