Merge branch 'cw-4886' into 'dev'

Output dtu_plots to local work dir then mv [CW-4886] See merge request epi2melabs/workflows/wf-transcriptomes!182
2024-09-09 18:41:18 +00:00 · 2024-09-09 18:41:18 +00:00 · 31085d0fe4
commit 31085d0fe4
parent f8e08baed1 46363987aa
2 changed files with 3 additions and 1 deletions
--- a/bin/plot_dtu_results.R
+++ b/bin/plot_dtu_results.R
@ -44,7 +44,7 @@ sig_level <- 0.05
 genes <- as.character(tdf[which(tdf$p_gene < sig_level),]$gene_id)
 genes <- unique(genes)

-pdf("de_analysis/dtu_plots.pdf")
+pdf("dtu_plots.pdf")

 for(gene in genes){
    gdf<-tdf[which(tdf$gene_id==gene),]
--- a/subworkflows/differential_expression.nf
+++ b/subworkflows/differential_expression.nf
@ -106,6 +106,8 @@ process plotResults {
        path "de_analysis/results_dtu.pdf", emit: dtu_pdf
    """
    plot_dtu_results.R
+    # output plots to common analysis output directory
+    mv dtu_plots.pdf de_analysis/dtu_plots.pdf
    """
 }