kfukuta/wf-transcriptomes-v202
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

Merge branch 'CW-7279' into 'dev'

Browse Source 
Use mode copy in publishDir [CW-7279]

Closes CW-7279

See merge request epi2melabs/workflows/wf-transcriptomes!308
This commit is contained in:
Natalia Garcia 2026-05-27 09:29:30 +00:00
commit 33ad57cdaa
1 changed files with 3 additions and 3 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

6
subworkflows/mods.nf
View File

@ -44,7 +44,7 @@ process runModkitPileup {
tuple val(alias),
path("${alias}.mods.bedmethyl.gz"),
emit: bedmethyl
publishDir "${params.out_dir}/${output_key}/mods"
publishDir "${params.out_dir}/${output_key}/mods", mode: 'copy'
script:
output_key = alias == "cohort" ? "cohort" : "samples/${alias}" // nodef
@ -77,7 +77,7 @@ process modkit_tobigwig {
tuple val(alias),
path("${alias}.mods.*.bw"),
emit: bigwig
publishDir "${params.out_dir}/${output_key}/mods"
publishDir "${params.out_dir}/${output_key}/mods", mode: 'copy'
script:
output_key = alias == "cohort" ? "cohort" : "samples/${alias}" // nodef
@ -112,7 +112,7 @@ process summariseModkitBedmethyl {
tuple val(alias),
path("${alias}.mods.summary.tsv"),
emit: summary
publishDir "${params.out_dir}/${output_key}/mods"
publishDir "${params.out_dir}/${output_key}/mods", mode: 'copy'
script:
output_key = alias == "cohort" ? "cohort" : "samples/${alias}" // nodef