kfukuta/wf-transcriptomes-v202
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add shell guards

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This commit is contained in:
Chris Wright 2021-02-15 15:22:13 +00:00
parent 1815784a89
commit 37d2e6c755
1 changed files with 2 additions and 0 deletions
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nextflow.config
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@ -24,6 +24,7 @@ profiles {
withLabel:pysam { withLabel:pysam {
container = 'ontresearch/workflow-template:latest' container = 'ontresearch/workflow-template:latest'
} }
shell = ['/bin/bash', '-euo', 'pipefail']
} }
} }
@ -37,6 +38,7 @@ profiles {
withLabel:pysam { withLabel:pysam {
conda = "environment.yaml" conda = "environment.yaml"
} }
shell = ['/bin/bash', '-euo', 'pipefail']
} }
conda { conda {
cacheDir = "" cacheDir = ""