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Neil Horner 2023-06-12 09:03:29 +01:00
parent fc642c9535
commit 3ac202d457
2 changed files with 2 additions and 2 deletions
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README.md
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@ -162,7 +162,7 @@ Pychopper and minimap2 can take options via `minimap2_opts` and `pychopper_opts`
- pychopper needs to know which cDNA synthesis kit used - pychopper needs to know which cDNA synthesis kit used
- SQK-PCS109: use `pychopper_opts = '-k PCS109'` (default) - SQK-PCS109: use `pychopper_opts = '-k PCS109'` (default)
- SQK-PCS110: use `pychopper_opts = '-k PCS110'` - SQK-PCS110: use `pychopper_opts = '-k PCS110'`
- SQK-PCS11: use `pychopper_opts = '-k PCS111'` - SQK-PCS111: use `pychopper_opts = '-k PCS111'`
- pychopper can use one of two available backends for identifying primers in the raw reads - pychopper can use one of two available backends for identifying primers in the raw reads
- nhmmscan `pychopper opts = '-m phmm'` - nhmmscan `pychopper opts = '-m phmm'`
- edlib `pychopper opts = '-m edlib'` - edlib `pychopper opts = '-m edlib'`

2
docs/quickstart.md
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@ -72,7 +72,7 @@ Pychopper and minimap2 can take options via `minimap2_opts` and `pychopper_opts`
- pychopper needs to know which cDNA synthesis kit used - pychopper needs to know which cDNA synthesis kit used
- SQK-PCS109: use `pychopper_opts = '-k PCS109'` (default) - SQK-PCS109: use `pychopper_opts = '-k PCS109'` (default)
- SQK-PCS110: use `pychopper_opts = '-k PCS110'` - SQK-PCS110: use `pychopper_opts = '-k PCS110'`
- SQK-PCS11: use `pychopper_opts = '-k PCS111'` - SQK-PCS111: use `pychopper_opts = '-k PCS111'`
- pychopper can use one of two available backends for identifying primers in the raw reads - pychopper can use one of two available backends for identifying primers in the raw reads
- nhmmscan `pychopper opts = '-m phmm'` - nhmmscan `pychopper opts = '-m phmm'`
- edlib `pychopper opts = '-m edlib'` - edlib `pychopper opts = '-m edlib'`