kfukuta/wf-transcriptomes-v202
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example cmd update

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This commit is contained in:
Sarah Griffiths 2023-12-08 14:35:24 +00:00
parent 6e5b1262ff
commit 45dc9efb49
1 changed files with 5 additions and 2 deletions
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7
nextflow.config
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@ -92,13 +92,16 @@ params {
wf { wf {
example_cmd = [ example_cmd = [
"--condition_sheet 'wf-transcriptomes-demo/condition_sheet.tsv'", "--de_analysis",
"--direct_rna", "--direct_rna",
"--fastq 'wf-transcriptomes-demo/differential_expression_fastq'", "--fastq 'wf-transcriptomes-demo/differential_expression_fastq'",
"--jaffal_annotation 'genCode22'",
"--jaffal_genome 'hg38_chr20'",
"--jaffal_refBase 'wf-transcriptomes-demo/chr20'",
"--minimap2_index_opts '-k15'", "--minimap2_index_opts '-k15'",
"--ref_annotation 'wf-transcriptomes-demo/gencode.v22.annotation.chr20.gtf'", "--ref_annotation 'wf-transcriptomes-demo/gencode.v22.annotation.chr20.gtf'",
"--ref_genome 'wf-transcriptomes-demo/hg38_chr20.fa'", "--ref_genome 'wf-transcriptomes-demo/hg38_chr20.fa'",
"--de_analysis", "--sample_sheet 'wf-transcriptomes-demo/sample_sheet.csv'",
] ]
agent = null agent = null
container_sha = "shae7c9f184996a384e99be68e790f0612f0c732867" container_sha = "shae7c9f184996a384e99be68e790f0612f0c732867"