From 63bef44dccef552c02777b68db997f7b1965a581 Mon Sep 17 00:00:00 2001 From: Sam Nicholls Date: Tue, 16 May 2023 14:59:53 +0100 Subject: [PATCH] Add AWS demo url configuration --- CHANGELOG.md | 15 +++++++++++---- nextflow_schema.json | 1 + 2 files changed, 12 insertions(+), 4 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index aed31d1..5a04a72 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,21 +1,24 @@ # Changelog All notable changes to this project will be documented in this file. -The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), +The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/), and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). ## [unreleased] ### Changed - LICENSE to Oxford Nanopore Technologies PLC. Public License Version 1.0. +### Added +- Configuration for running demo data in AWS + ## [v0.1.10] ### Changed - Condition sheet parameter description fixed to CSV - Update fastqingress - + ## [v0.1.9] ### Changed -- Simplify JAFFAL docs +- Simplify JAFFAL docs ## [v0.1.8] ### Changed @@ -31,15 +34,16 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### Changed - Removed sanitize option - Reduce size of differential expression data. + ### Added - Improved DE explanation in docs - Option to turn off transcript assembly steps with param transcript_assembly + ### Fixed - Fix JAFFAL terminating workflow when no fusions found. - Error if condition sheet and sample sheet don't match. - Failed to plot DE graphs when one of data sets is 0 length. - ## [v0.1.5] ### Added - Differential transcript and gene expression subworkflow @@ -47,6 +51,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ## [v0.1.4] ### Added - JAFFAL fusion detection subworkflow + ### Changed - Args parser for fastqingress - Set out_dir option type to ensure output is written to correct directory on Windows @@ -74,6 +79,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ## [v0.1.0] ### Added - Added the denovo pipeline + ### Changed - Updates to the report plots @@ -81,3 +87,4 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### Added - First release - Initial port of Snakemake WF from https://github.com/nanoporetech/pipeline-nanopore-ref-isoforms + diff --git a/nextflow_schema.json b/nextflow_schema.json index d6b4c02..84b1dbd 100644 --- a/nextflow_schema.json +++ b/nextflow_schema.json @@ -4,6 +4,7 @@ "title": "epi2me-labs/wf-transcriptomes", "description": "Transcriptome analysis including gene fusions, differential expression as well as assembly and annotation of cDNA and direct RNA sequencing data.", "demo_url": "https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-transcriptomes/wf-transcriptomes-demo.tar.gz", + "aws_demo_url": "https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-transcriptomes/wf-transcriptomes-demo/aws.nextflow.config", "url": "https://github.com/epi2me-labs/wf-transcriptomes", "type": "object", "definitions": {