Merge branch 'final-tag' into 'dev'

tag v1.7.1

See merge request epi2melabs/workflows/wf-transcriptomes!220

CHANGELOG.md

@@ -4,23 +4,22 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## [Unreleased]
+## [v1.7.1]
 ### Changed
 - Updated to wf-template v5.6.2, changing:
     - Reduce verbosity of debug logging from fastcat which can occasionally occlude errors found in FASTQ files during ingress.
     - Log banner art to say "EPI2ME" instead of "EPI2ME Labs" to match current branding. This has no effect on the workflow outputs.
     - pre-commit configuration to resolve an internal dependency problem with flake8. This has no effect on the workflow.
-    - Stringtie updated to v2.2.3, which fixes stalling at transcriptome assembly step.
-    - Gffcompare updated to v0.12.6, which fixes issue where ref_gene_id was assigned an nan value.
+- Stringtie updated to v2.2.3, which fixes stalling at transcriptome assembly step.
+- Gffcompare updated to v0.12.6, which fixes issue where ref_gene_id was assigned an nan value.
 ### Fixed
 - Updated to wf-template v5.6.2, fixing:
-    - dacite.exceptions.WrongTypeError during report generation when barcode is null.
     - Sequence summary read length N50 incorrectly displayed minimum read length, it now correctly shows the N50.
     - Sequence summary component alignment and coverage plots failed to plot under some conditions.
 - Error in `deAnalysis` process - `mode(counts) %in% "numeric" is not TRUE` - caused by hyphens in sample sheet aliases.
 - Error in `deAnalysis` process - `values in 'transcripts$tx_strand' must be "+" or "-"`.
   - The workflow will now filter out any unstranded annotations from downstream analysis and log a warning.
-- Output the `results_dexseq.tsv` file when `--de_analysis` enabled.
+- Missing `results_dexseq.tsv` file when `--de_analysis` enabled.
 
 ## [v1.7.0]
 ### Changed

nextflow.config

@@ -107,7 +107,7 @@ manifest {
     description     = 'Transcriptome analysis including differential expression as well as assembly and annotation of cDNA and direct RNA sequencing data.'
     mainScript      = 'main.nf'
     nextflowVersion = '>=23.04.2'
-    version         = 'v1.7.0'
+    version         = 'v1.7.1'
 }
 
 epi2melabs {