diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 5d4c522..c785084 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -9,28 +9,3 @@ variables: # Only common file inputs and option values need to be given here # (not things such as -profile) NF_WORKFLOW_OPTS: "--fastq test_data" - - -macos-run: - stage: test - script: - - docker run hello-world - - wget -qO- https://get.nextflow.io | bash - # pull back the image - - echo ${CI_BUILD_TOKEN} | docker login --username gitlab-ci-token --password-stdin ${CI_REGISTRY} - - docker pull ${CI_REGISTRY_IMAGE}:${CI_COMMIT_SHORT_SHA} - # run the workflow - # custom scripting - - echo "Running workflow specific script" - - echo "Running:'${NF_BEFORE_SCRIPT}'" - - eval ${NF_BEFORE_SCRIPT} - # left for invididual project to control ${NF_WORKFLOW_OPTS} - - CMD="./nextflow ${NF_RUN_OPTS_TAG_TEST} -profile standard ${NF_OUTPUT_OPTS} ${NF_WORKFLOW_OPTS}" - - echo "Running:'${CMD}'" - - ${CMD} - needs: - - ["docker-run"] - only: - - "/^dev$/" - except: - - tags