This commit is contained in:
Neil Horner 2023-08-11 15:34:42 +01:00
parent fcc7347a8b
commit 816fe70b91
2 changed files with 2 additions and 2 deletions

View File

@ -127,7 +127,7 @@ tar -xzvf test_data.tar.gz
**Example execution of a workflow for reference-based transcript assembly and fusion detection**
```
OUTPUT=~/output;
nexflow run epi2me-labs/wf-transcriptomes \
nextflow run epi2me-labs/wf-transcriptomes \
--fastq ERR6053095_chr20.fastq \
--ref_genome chr20/hg38_chr20.fa \
--ref_annotation chr20/gencode.v22.annotation.chr20.gtf \

View File

@ -37,7 +37,7 @@ tar -xzvf test_data.tar.gz
**Example execution of a workflow for reference-based transcript assembly and fusion detection**
```
OUTPUT=~/output;
nexflow run epi2me-labs/wf-transcriptomes \
nextflow run epi2me-labs/wf-transcriptomes \
--fastq ERR6053095_chr20.fastq \
--ref_genome chr20/hg38_chr20.fa \
--ref_annotation chr20/gencode.v22.annotation.chr20.gtf \