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Container pychop 2.7.9

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Neil Horner 2023-10-04 17:23:33 +00:00
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README.md
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@ -142,6 +142,7 @@ Pychopper and minimap2 can take options via `--minimap2_opts` and `--pychopper_o
- SQK-PCS109: `--pychopper_opts '-k PCS109'` (default) - SQK-PCS109: `--pychopper_opts '-k PCS109'` (default)
- SQK-PCS110: `--pychopper_opts '-k PCS110'` - SQK-PCS110: `--pychopper_opts '-k PCS110'`
- SQK-PCS111: `--pychopper_opts '-k PCS111'` - SQK-PCS111: `--pychopper_opts '-k PCS111'`
- SQK-LSK114: `--pychopper_opts '-k LSK114'`
- pychopper can use one of two available backends for identifying primers in the raw reads - pychopper can use one of two available backends for identifying primers in the raw reads
- nhmmscan `--pychopper opts '-m phmm'` - nhmmscan `--pychopper opts '-m phmm'`
- edlib `--pychopper opts '-m edlib'` - edlib `--pychopper opts '-m edlib'`

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docs/quickstart.md
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@ -67,6 +67,7 @@ Pychopper and minimap2 can take options via `--minimap2_opts` and `--pychopper_o
- SQK-PCS109: `--pychopper_opts '-k PCS109'` (default) - SQK-PCS109: `--pychopper_opts '-k PCS109'` (default)
- SQK-PCS110: `--pychopper_opts '-k PCS110'` - SQK-PCS110: `--pychopper_opts '-k PCS110'`
- SQK-PCS111: `--pychopper_opts '-k PCS111'` - SQK-PCS111: `--pychopper_opts '-k PCS111'`
- SQK-LSK114: `--pychopper_opts '-k LSK114'`
- pychopper can use one of two available backends for identifying primers in the raw reads - pychopper can use one of two available backends for identifying primers in the raw reads
- nhmmscan `--pychopper opts '-m phmm'` - nhmmscan `--pychopper opts '-m phmm'`
- edlib `--pychopper opts '-m edlib'` - edlib `--pychopper opts '-m edlib'`