From 9d59c6b902af831464bf3334c2780e1bf4d82898 Mon Sep 17 00:00:00 2001
From: Natalia Garcia <natalia.garcia@nanoporetech.com>
Date: Wed, 27 May 2026 10:00:40 +0000
Subject: [PATCH] Template updates: reference

---
 lib/reference.nf | 1 -
 1 file changed, 1 deletion(-)

diff --git a/lib/reference.nf b/lib/reference.nf
index b5c9235..df3645b 100644
--- a/lib/reference.nf
+++ b/lib/reference.nf
@@ -72,7 +72,6 @@ process faidx {
 
 // Process to create the faidx indexes for a gzipped reference
 process gz_faidx {
-    publishDir "${params.out_dir}", mode: 'copy', pattern: "*"
     label "wf_common"
     cpus 1
     memory 4.GB