This commit is contained in:
Neil Horner 2023-08-31 22:52:18 +01:00
parent 3509cebde4
commit 9e6654422e
2 changed files with 2 additions and 2 deletions

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@ -158,7 +158,7 @@ Select how the transcriptome used for analysis should be prepared:
- Gnerate transcriptome via the denovo pipeline `--transcriptome_source denovo"`
To run the workflow with direct RNA reads `--direct_rna false` (this just skips the pychopper step).
To run the workflow with direct RNA reads `--direct_rna true` (this just skips the pychopper step).
Pychopper and minimap2 can take options via `--minimap2_opts` and `--pychopper_opts`, for example:

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@ -68,7 +68,7 @@ Select how the transcriptome used for analysis should be prepared:
- Gnerate transcriptome via the denovo pipeline `--transcriptome_source denovo"`
To run the workflow with direct RNA reads `--direct_rna false` (this just skips the pychopper step).
To run the workflow with direct RNA reads `--direct_rna true` (this just skips the pychopper step).
Pychopper and minimap2 can take options via `--minimap2_opts` and `--pychopper_opts`, for example: