diff --git a/bin/workflow_glue/prepare_annotation_reference.py b/bin/workflow_glue/prepare_annotation_reference.py index efab524..b047344 100644 --- a/bin/workflow_glue/prepare_annotation_reference.py +++ b/bin/workflow_glue/prepare_annotation_reference.py @@ -250,8 +250,9 @@ class Annotation: if part ) raise ValueError( - "Failed to convert annotation to GTF with " - "gffread:\n" + details + "Failed to convert annotation to GTF with gffread.\n" + f"Return code: {result.returncode}\n" + "Error message:" + details ) if not dest.exists() or dest.stat().st_size < 1: diff --git a/subworkflows/transcriptome.nf b/subworkflows/transcriptome.nf index f473b4d..d8d8fed 100644 --- a/subworkflows/transcriptome.nf +++ b/subworkflows/transcriptome.nf @@ -6,7 +6,7 @@ OPTIONAL_FILE = file("$projectDir/data/OPTIONAL_FILE") process prepareAnnotationReference { label "wf_transcriptomes" cpus 1 - memory "4 GB" + memory "6 GB" input: path ref_annotation path ref_genome