diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 8003870..685724e 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -24,6 +24,8 @@ repos: - flake8-builtins - flake8-absolute-import - flake8-print + # avoid snowballstemmer>=3.0 as it causes flake8-docstrings to stop working [CW-6098] + - snowballstemmer==2.2.0 args: [ "bin", "--import-order-style=google", diff --git a/CHANGELOG.md b/CHANGELOG.md index 88a875e..67c73b7 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -7,12 +7,13 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ## [Unreleased] ### Changed -- Updated to wf-template v5.6.0, changing: +- Updated to wf-template v5.6.1, changing: - Reduce verbosity of debug logging from fastcat which can occasionally occlude errors found in FASTQ files during ingress. - Log banner art to say "EPI2ME" instead of "EPI2ME Labs" to match current branding. This has no effect on the workflow outputs. + - pre-commit configuration to resolve an internal dependency problem with flake8. This has no effect on the workflow. ### Fixed -- Updated to wf-template v5.6.0, fixing: +- Updated to wf-template v5.6.1, fixing: - dacite.exceptions.WrongTypeError during report generation when barcode is null. - Sequence summary read length N50 incorrectly displayed minimum read length, it now correctly shows the N50. - Sequence summary component alignment and coverage plots failed to plot under some conditions.