diff --git a/CHANGELOG.md b/CHANGELOG.md index 4df7cf8..ceabb35 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -13,6 +13,7 @@ Users of wf-transcriptomes v2.0.0 who have encountered issues during discovery a ### Fixed - "Error in full_join" encountered during `runPerSampleBambuQuant` when all read classes have no compatible transcript assignment. An empty quant table is correctly emitted instead. - "unable to find an inherited method for function 'rowData'" encountered during `runJointBambuDiscover` when providing many samples. The workflow now correctly handles data spilled to disk by bambu discover. +- Adjusted p-values below 0.001 in the volcano selection table are now shown in scientific notation instead of being rounded to 0.000. ## [v2.0.0] @@ -323,4 +324,3 @@ This patch release of wf-transcriptomes updates internal workflow naming, and do ### Added - First release - Initial port of Snakemake WF from https://github.com/nanoporetech/pipeline-nanopore-ref-isoforms - diff --git a/bin/workflow_glue/volcano.py b/bin/workflow_glue/volcano.py index e2e0a6d..9597b94 100644 --- a/bin/workflow_glue/volcano.py +++ b/bin/workflow_glue/volcano.py @@ -581,7 +581,15 @@ def volcano(data, fold_threshold=1, p_threshold=0.05): TableColumn( field="padj", title="padj", - formatter=NumberFormatter(format="0.000e"), + formatter=HTMLTemplateFormatter( + template=""" + <% if (value < 0.001 && value !== 0) { %> + <%= value.toExponential(2) %> + <% } else { %> + <%= value.toFixed(4) %> + <% } %> + """ + ), ), ]) selected_table = DataTable(