Merge branch 'template-update' into 'dev'

Update file check_sample_sheet.py See merge request epi2melabs/workflows/wf-transcriptomes!125
2023-09-04 09:24:15 +00:00 · 2023-09-04 09:24:15 +00:00 · d9ee1034a3
commit d9ee1034a3
parent 261437ad81 fb718ac3f7
1 changed files with 3 additions and 2 deletions
--- a/bin/workflow_glue/check_sample_sheet.py
+++ b/bin/workflow_glue/check_sample_sheet.py
@ -57,9 +57,10 @@ def main(args):
                else:
                    # check we got the same number of fields
                    if len(row) != n_cols:
-                        raise ValueError(
-                            f"Unexpected number of cells in row number {n_row}."
+                        sys.stdout.write(
+                            f"Unexpected number of cells in row number {n_row}"
                        )
+                        sys.exit()
                try:
                    barcodes.append(row["barcode"])
                except KeyError: