kfukuta/wf-transcriptomes-v202
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Merge branch 'cw-7264' into 'dev'

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Sort joint bambu inputs to fix caching [CW-7264]

See merge request epi2melabs/workflows/wf-transcriptomes!282
This commit is contained in:
Kiah McIntosh 2026-05-20 16:31:25 +00:00
commit e98a3f14be
1 changed files with 1 additions and 1 deletions
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subworkflows/transcriptome.nf
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@ -221,7 +221,7 @@ workflow transcriptome_analysis {
joint_discover = runJointBambuDiscover(
alignments
.collect(flat: false)
.toSortedList { a, b -> a[0].alias <=> b[0].alias }
.map { rows ->
// transform [meta, bam, bai] rows to
// [meta, [alias1...aliasN], [bam1...bamN], [bai1...baiN], sample_sheet]