diff --git a/bin/report.py b/bin/report.py index bc3699b..47dd946 100755 --- a/bin/report.py +++ b/bin/report.py @@ -882,7 +882,7 @@ def main(): "Transcript isoform report", "wf-transcriptomes", revision=args.revision, commit=args.commit) - # Add reads summary section + # QC seq_stats_tabs(report, args.sample_ids, args.summaries) if args.alignment_stats is not None: @@ -897,7 +897,10 @@ def main(): section.table(df_aln_stats) - # workflow-specific plotting + if args.pychop_report is not None: + pychopper_plots(report, args.pychop_report) + + # Results transcriptome_summary( report, args.gff_annotation, sample_ids, denovo=args.denovo) @@ -908,9 +911,6 @@ def main(): report.write(args.report) - if args.pychop_report is not None: - pychopper_plots(report, args.pychop_report) - if df_tmaps is not None: transcript_table(report, df_tmaps, args.transcript_table_cov_thresh)