From fb718ac3f7c10a8b3f83182e177e27ec327d659a Mon Sep 17 00:00:00 2001 From: Sarah Griffiths Date: Fri, 1 Sep 2023 16:03:19 +0000 Subject: [PATCH] Update file check_sample_sheet.py --- bin/workflow_glue/check_sample_sheet.py | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/bin/workflow_glue/check_sample_sheet.py b/bin/workflow_glue/check_sample_sheet.py index e9d956f..d77f1ab 100755 --- a/bin/workflow_glue/check_sample_sheet.py +++ b/bin/workflow_glue/check_sample_sheet.py @@ -57,9 +57,10 @@ def main(args): else: # check we got the same number of fields if len(row) != n_cols: - raise ValueError( - f"Unexpected number of cells in row number {n_row}." + sys.stdout.write( + f"Unexpected number of cells in row number {n_row}" ) + sys.exit() try: barcodes.append(row["barcode"]) except KeyError: