From feb1c5e9fdde87bffb87b87b7f4b6fc514deefb7 Mon Sep 17 00:00:00 2001
From: Chris Wright <chris.wright@nanoporetech.com>
Date: Wed, 30 Jun 2021 16:59:26 +0000
Subject: [PATCH] Testnewmamba

---
 CHANGELOG.md    | 4 ++++
 Dockerfile      | 3 ++-
 nextflow.config | 2 +-
 3 files changed, 7 insertions(+), 2 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 5b7052a..24db71e 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -4,6 +4,10 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [v0.0.6]
+### Changed
+- Explicitely install into base conda env
+
 ## [v0.0.5]
 ### Added
 - Software versioning report example.
diff --git a/Dockerfile b/Dockerfile
index ea55adb..96f6ac3 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -6,7 +6,8 @@ COPY $ENVFILE $HOME/environment.yaml
 RUN \
     . $CONDA_DIR/etc/profile.d/mamba.sh \
     && micromamba activate \
-    && micromamba install --file $HOME/environment.yaml \
+    && micromamba install -n base --file $HOME/environment.yaml \
+    && micromamba clean --all --yes \
     && fix-permissions $CONDA_DIR \
     && fix-permissions $HOME
 
diff --git a/nextflow.config b/nextflow.config
index 873695b..2289286 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -14,7 +14,7 @@ params {
     help = false
     fastq = null
     out_dir = "output"
-    wfversion = "v0.0.5"
+    wfversion = "v0.0.6"
     aws_image_prefix = null
     aws_queue = null
 }