Sam Nicholls
175e6c9437
Per-sample pileup counts [CW-7196]
2026-05-26 09:52:38 +00:00
Neil Horner
020d555219
Add the missing annotation ref summary [CW-7271]
2026-05-22 17:05:56 +00:00
Neil Horner
5823f04809
[CW-7211] Hierarchical plot + PCA
2026-05-22 14:34:50 +00:00
Kiah McIntosh
759cb9d868
Skip cohort processes when n=1 [CW-7208]
2026-05-21 16:19:18 +00:00
Natalia Garcia
38bd9ba6c0
Merge branch 'CW-7232-references' into 'dev'
...
Simplify reference handling through the workflow prepareAnnotation [CW-7232]
Closes CW-7232
See merge request epi2melabs/workflows/wf-transcriptomes!275
2026-05-20 12:49:08 +00:00
Natalia Garcia
dc0ebf3a52
Simplify reference handling through the workflow prepareAnnotation [CW-7232]
2026-05-20 12:49:08 +00:00
Neil Horner
7194b38360
[CW-7207] Volcanic
2026-05-20 12:31:06 +00:00
Chris Wright
68809a0147
[CW-7250] fix up typography
2026-05-18 15:14:53 +00:00
Sam Nicholls
db744dbe81
Scatter-gather bambu quant [CW-7201]
2026-05-18 12:29:48 +00:00
Chris Wright
3d7d49795e
[CW-7235] cast ? to . in gffs
2026-05-16 13:22:47 +00:00
Sam Nicholls
06d77b2543
Use new alignment ingress [CW-7186][CW-7202][CW-7229]
2026-05-14 09:12:38 +00:00
Chris Wright
f2458c5603
[CW-7172] Improve testing and reporting on differential analysis analysis
2026-05-11 09:42:54 +00:00
Chris Wright
3e0dfd21e2
[CW-7166] [CW-7169] Reference and annotation preparation
2026-05-07 10:09:36 +00:00
Chris Wright
43cf5bf42a
Refresh workflow to use bambu, sqanti, and dexseq
2026-05-05 14:10:04 +00:00
Neil Horner
0a5c39cdf4
Account for stringtie multigene transcript artefacts
2024-12-12 14:30:31 +00:00
Neil Horner
624c16a3b1
Update permissions
2024-12-02 12:55:51 +00:00
Neil Horner
5c4780a1b2
Update report CW-3077
2024-10-25 15:18:05 +00:00
Sarah Griffiths
e1b2a08918
control for sample sheet
2023-10-25 10:41:08 +00:00
Sarah Griffiths
df6c9a2a31
CW-2313 remove condition sheet requirement
2023-07-10 16:45:32 +00:00
Neil Horner
d8d8a791af
Glue
2023-02-24 14:42:57 +00:00
