Neil Horner
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4fe583d4ea
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Fix and simplify column name checking
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2025-08-01 09:14:20 +00:00 |
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Sarah Griffiths
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62e4266040
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Output dexseq file [CW-6285]
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2025-07-29 08:54:20 +00:00 |
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Neil Horner
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b2ac1edbb9
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Container update CW-5998
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2025-05-16 08:38:28 +00:00 |
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Neil Horner
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19b54ba2ff
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Fix hyphens in sample alias CW-5484
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2025-05-14 13:55:01 +00:00 |
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Neil Horner
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18bf1d5b19
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Template update 5.6.0 [CW-6070]
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2025-05-06 10:23:01 +00:00 |
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Sarah Griffiths
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c1f784ad04
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fix memory issue by replacing seq alignment stats with flagstat [CW-5858]
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2025-03-31 09:20:35 +00:00 |
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Sarah Griffiths
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d5de051fd4
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Only use exons in DE analysis [CW-5786]
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2025-03-28 09:58:05 +00:00 |
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Sarah Griffiths
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b4bba1432b
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Template v5.5.0 updates
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2025-03-14 11:04:18 +00:00 |
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Neil Horner
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350cb8d23b
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Merge branch 'missing_file_CW-5556' into 'dev'
Fix overwritten DGE results file
See merge request epi2melabs/workflows/wf-transcriptomes!199
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2025-02-18 17:05:45 +00:00 |
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Neil Horner
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b62722751f
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Fix overwritten DGE results file
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2025-02-18 17:05:45 +00:00 |
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Kiah McIntosh
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eab8ef1efe
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Use args for R script inputs [CW-3398]
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2025-02-07 08:42:49 +00:00 |
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Neil Horner
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c8c5922965
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Access to undefined channel output bug CW-5398
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2024-12-13 11:51:04 +00:00 |
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Neil Horner
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0a5c39cdf4
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Account for stringtie multigene transcript artefacts
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2024-12-12 14:30:31 +00:00 |
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Neil Horner
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624c16a3b1
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Update permissions
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2024-12-02 12:55:51 +00:00 |
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Neil Horner
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5c4780a1b2
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Update report CW-3077
|
2024-10-25 15:18:05 +00:00 |
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Sarah Griffiths
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d83807f38d
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Tidy de analysis
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2024-09-16 09:26:12 +00:00 |
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Sarah Griffiths
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7ced52c05b
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Template updates
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2024-09-11 12:47:01 +00:00 |
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Sam Nicholls
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46363987aa
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Output dtu_plots to local work dir then mv [CW-4886]
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2024-09-09 18:41:17 +00:00 |
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Neil Horner
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0200514536
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Remove fusion detection [CW-4552]
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2024-08-06 20:20:19 +00:00 |
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Neil Horner
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0f4eee002a
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template update 2024-07-10
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2024-07-26 08:34:05 +00:00 |
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Neil Horner
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c662293317
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Template update
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2024-06-27 16:13:55 +01:00 |
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Neil Horner
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e2585dcd11
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Template update 2024 05 24
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2024-05-30 19:40:11 +00:00 |
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Sarah Griffiths
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d7fcb2d5f7
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Temp update
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2024-05-10 08:42:12 +00:00 |
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Sarah Griffiths
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63e0fe6524
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change significance level to mark on MA plot
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2024-04-10 08:09:23 +00:00 |
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Sarah Griffiths
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595aae4006
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Template update
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2024-04-03 09:47:29 +00:00 |
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Sarah Griffiths
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6a14a1d85b
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Remove need to retry based on GTF/GFF
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2024-02-22 09:34:38 +00:00 |
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Sarah Griffiths
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e3b1967872
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Improve ref annotation transcript id version handling
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2024-02-19 10:29:04 +00:00 |
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Sarah Griffiths
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e30d3aec98
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DE_analysis params change input types to numeric
|
2024-02-16 10:23:15 +00:00 |
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Neil Horner
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bb9acf55be
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Resolve CW-3468 "Incorrect ids"
|
2024-02-13 08:48:21 +00:00 |
|
Neil Horner
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d5b0cc6203
|
JAFFAL resources
|
2024-02-12 15:25:19 +00:00 |
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Sarah Griffiths
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1c67e3274e
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Seperate DE files required for the report and to be output to the user
|
2024-02-09 21:45:22 +00:00 |
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Neil Horner
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fdb938a147
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Publish isoforms table
|
2024-02-09 10:59:01 +00:00 |
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Sarah Griffiths
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1be77ba77f
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CW-3075 improve counts output files
|
2024-02-02 10:38:50 +00:00 |
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Neil Horner
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92cb357edc
|
Template updates 2024 01 12
|
2024-01-16 11:48:09 +00:00 |
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Sarah Griffiths
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b870078142
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tag v0.4.2
|
2023-11-17 10:06:36 +00:00 |
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Sarah Griffiths
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e1b2a08918
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control for sample sheet
|
2023-10-25 10:41:08 +00:00 |
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Sam Nicholls
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bb99170130
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Template updates [CW-1564][CW-2303][CW-2855]
|
2023-10-16 14:17:32 +00:00 |
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Sarah Griffiths
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f683d44411
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CW-2769 remove denovo
|
2023-09-27 08:02:00 +00:00 |
|
Sarah Griffiths
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fb718ac3f7
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Update file check_sample_sheet.py
|
2023-09-01 16:03:19 +00:00 |
|
Sarah Griffiths
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ab850ac67f
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tidy up DE outputs
|
2023-08-10 10:05:11 +00:00 |
|
Sarah Griffiths
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ec3c346fd8
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fix and test for files with no gene id in attributes
|
2023-07-26 18:14:00 +00:00 |
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Sarah Griffiths
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a58d08b6c4
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template updates
|
2023-07-25 08:33:01 +00:00 |
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Sarah Griffiths
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f86b74a494
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CW-2217 fix ordering of sample_ids
|
2023-07-12 11:05:34 +00:00 |
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Sarah Griffiths
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df6c9a2a31
|
CW-2313 remove condition sheet requirement
|
2023-07-10 16:45:32 +00:00 |
|
Sarah Griffiths
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d0e7fc4b26
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CW-2308 remove real path use
|
2023-06-28 17:37:49 +00:00 |
|
Sarah Griffiths
|
9f449ae467
|
CW-2188 add test for denovo plus warnings
|
2023-06-14 13:21:27 +00:00 |
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Sarah Griffiths
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ab275b6440
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CW-1920-Annotation-file-types
|
2023-05-31 20:48:35 +00:00 |
|
Sarah Griffiths
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5df7e3c2cd
|
template updates
|
2023-05-09 10:09:33 +00:00 |
|
Sarah Griffiths
|
8053448d61
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CW-1882 CSV
|
2023-04-04 11:54:35 +00:00 |
|
Neil Horner
|
d8d8a791af
|
Glue
|
2023-02-24 14:42:57 +00:00 |
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