Sarah Griffiths
|
62e4266040
|
Output dexseq file [CW-6285]
|
2025-07-29 08:54:20 +00:00 |
|
Neil Horner
|
b2ac1edbb9
|
Container update CW-5998
|
2025-05-16 08:38:28 +00:00 |
|
Neil Horner
|
18bf1d5b19
|
Template update 5.6.0 [CW-6070]
|
2025-05-06 10:23:01 +00:00 |
|
Sarah Griffiths
|
11c9221edc
|
memory ci config
|
2025-04-15 11:20:42 +00:00 |
|
Sarah Griffiths
|
00c2e9a18b
|
Fix aws/docker demo cmd [CW-5950]
|
2025-04-11 13:22:48 +00:00 |
|
Sarah Griffiths
|
b4bba1432b
|
Template v5.5.0 updates
|
2025-03-14 11:04:18 +00:00 |
|
Natalia Garcia
|
122ad8403a
|
Update workflow tags [CW-5563]
|
2025-02-13 23:39:09 +00:00 |
|
Kiah McIntosh
|
eab8ef1efe
|
Use args for R script inputs [CW-3398]
|
2025-02-07 08:42:49 +00:00 |
|
Neil Horner
|
937a41f2cc
|
Update memory for split_bam and build_minimap_index_transcriptome
|
2025-01-03 17:06:38 +00:00 |
|
Neil Horner
|
39ef6ab16a
|
bump version
|
2025-01-03 12:44:08 +00:00 |
|
Neil Horner
|
7ca3110648
|
Bump V1.6.0
|
2024-12-13 13:11:56 +00:00 |
|
Neil Horner
|
0a5c39cdf4
|
Account for stringtie multigene transcript artefacts
|
2024-12-12 14:30:31 +00:00 |
|
Neil Horner
|
d38c7f3661
|
template update
|
2024-12-05 10:26:25 +00:00 |
|
Sarah Griffiths
|
465d060933
|
Actually output the dexseq file
|
2024-11-05 11:51:40 +00:00 |
|
Sarah Griffiths
|
d83807f38d
|
Tidy de analysis
|
2024-09-16 09:26:12 +00:00 |
|
Sarah Griffiths
|
7ced52c05b
|
Template updates
|
2024-09-11 12:47:01 +00:00 |
|
Sarah Griffiths
|
14fe76dabc
|
CW-4613 IGV config
|
2024-09-06 09:27:56 +00:00 |
|
Neil Horner
|
abc40d9015
|
Add new cDNA kits
|
2024-08-07 11:31:14 +00:00 |
|
Neil Horner
|
0200514536
|
Remove fusion detection [CW-4552]
|
2024-08-06 20:20:19 +00:00 |
|
Neil Horner
|
a5699b2945
|
Bump v1.2.1
|
2024-07-04 14:48:30 +00:00 |
|
Neil Horner
|
c662293317
|
Template update
|
2024-06-27 16:13:55 +01:00 |
|
Neil Horner
|
515c8c0ed8
|
Bump v1.2.0
|
2024-06-04 17:28:29 +00:00 |
|
Neil Horner
|
cfa41f16d0
|
BAM input CW-3512
|
2024-06-04 09:25:31 +00:00 |
|
Neil Horner
|
e2585dcd11
|
Template update 2024 05 24
|
2024-05-30 19:40:11 +00:00 |
|
Sarah Griffiths
|
d7fcb2d5f7
|
Temp update
|
2024-05-10 08:42:12 +00:00 |
|
Sarah Griffiths
|
595aae4006
|
Template update
|
2024-04-03 09:47:29 +00:00 |
|
Sarah Griffiths
|
bd5c89efc5
|
Tag v1.1.1
|
2024-03-05 11:47:23 +00:00 |
|
Neil Horner
|
bb9acf55be
|
Resolve CW-3468 "Incorrect ids"
|
2024-02-13 08:48:21 +00:00 |
|
Neil Horner
|
92cb357edc
|
Template updates 2024 01 12
|
2024-01-16 11:48:09 +00:00 |
|
Sarah Griffiths
|
07b9edcb99
|
Temp up
|
2024-01-04 10:18:39 +00:00 |
|
Sarah Griffiths
|
45dc9efb49
|
example cmd update
|
2023-12-08 14:35:24 +00:00 |
|
Sarah Griffiths
|
3acf993586
|
de_analysis include in sample cmd
|
2023-12-08 09:32:07 +00:00 |
|
Sarah Griffiths
|
ed847d9a1f
|
template update
|
2023-12-07 14:05:02 +00:00 |
|
Neil Horner
|
d01162025a
|
Resolve CW-2369
|
2023-12-05 18:42:47 +00:00 |
|
Sarah Griffiths
|
35dc9dd722
|
pychopper parameters clear up
|
2023-12-04 21:12:57 +00:00 |
|
Sarah Griffiths
|
045a077fe1
|
docs update
|
2023-12-01 12:36:33 +00:00 |
|
Sarah Griffiths
|
b870078142
|
tag v0.4.2
|
2023-11-17 10:06:36 +00:00 |
|
Sam Nicholls
|
bb99170130
|
Template updates [CW-1564][CW-2303][CW-2855]
|
2023-10-16 14:17:32 +00:00 |
|
Neil Horner
|
25d2bfd07c
|
Container pychop 2.7.9
|
2023-10-04 16:23:32 +00:00 |
|
Sarah Griffiths
|
fb6182c717
|
tag
|
2023-09-28 08:18:11 +00:00 |
|
Sarah Griffiths
|
f683d44411
|
CW-2769 remove denovo
|
2023-09-27 08:02:00 +00:00 |
|
Sarah Griffiths
|
7e2d0214e4
|
update version
|
2023-09-08 10:55:54 +00:00 |
|
Sarah Griffiths
|
4065a4d82f
|
params update defaults
|
2023-09-06 08:00:10 +00:00 |
|
Sarah Griffiths
|
2bda37388c
|
Update fastqingress.nf
|
2023-09-05 08:57:28 +00:00 |
|
Sarah Griffiths
|
2ce40ee2f0
|
common sha update and tag
|
2023-08-10 12:48:45 +00:00 |
|
Sarah Griffiths
|
d535778497
|
add titles
|
2023-08-08 11:18:15 +00:00 |
|
Sarah Griffiths
|
b6159b2c26
|
nf version
|
2023-08-03 15:54:39 +00:00 |
|
Sarah Griffiths
|
ec3c346fd8
|
fix and test for files with no gene id in attributes
|
2023-07-26 18:14:00 +00:00 |
|
Sarah Griffiths
|
a58d08b6c4
|
template updates
|
2023-07-25 08:33:01 +00:00 |
|
Sarah Griffiths
|
a3bc02888e
|
tag v0.2.0
|
2023-07-12 08:21:11 +00:00 |
|