Sarah Griffiths
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57c0f5b303
|
Handle annotations with no strand CW-3998
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2024-06-25 13:08:32 +00:00 |
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Neil Horner
|
cfa41f16d0
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BAM input CW-3512
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2024-06-04 09:25:31 +00:00 |
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Sarah Griffiths
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d7fcb2d5f7
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Temp update
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2024-05-10 08:42:12 +00:00 |
|
Neil Horner
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bb9acf55be
|
Resolve CW-3468 "Incorrect ids"
|
2024-02-13 08:48:21 +00:00 |
|
Sarah Griffiths
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4bb02049ec
|
Resource updates
|
2024-02-12 10:20:02 +00:00 |
|
Sarah Griffiths
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1c67e3274e
|
Seperate DE files required for the report and to be output to the user
|
2024-02-09 21:45:22 +00:00 |
|
Neil Horner
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fdb938a147
|
Publish isoforms table
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2024-02-09 10:59:01 +00:00 |
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Sarah Griffiths
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bf136640ed
|
No ref annotation workflow still completes
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2024-02-07 22:50:04 +00:00 |
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Sarah Griffiths
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1be77ba77f
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CW-3075 improve counts output files
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2024-02-02 10:38:50 +00:00 |
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Sarah Griffiths
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3acf993586
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de_analysis include in sample cmd
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2023-12-08 09:32:07 +00:00 |
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Neil Horner
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d01162025a
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Resolve CW-2369
|
2023-12-05 18:42:47 +00:00 |
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Sarah Griffiths
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35dc9dd722
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pychopper parameters clear up
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2023-12-04 21:12:57 +00:00 |
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Sarah Griffiths
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045a077fe1
|
docs update
|
2023-12-01 12:36:33 +00:00 |
|
Sam Nicholls
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bb99170130
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Template updates [CW-1564][CW-2303][CW-2855]
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2023-10-16 14:17:32 +00:00 |
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Sarah Griffiths
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f683d44411
|
CW-2769 remove denovo
|
2023-09-27 08:02:00 +00:00 |
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Sarah Griffiths
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edf3a24315
|
deal with transcriptome fasta headers that contains |
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2023-09-06 20:18:40 +00:00 |
|
Sarah Griffiths
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ab850ac67f
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tidy up DE outputs
|
2023-08-10 10:05:11 +00:00 |
|
Sarah Griffiths
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d535778497
|
add titles
|
2023-08-08 11:18:15 +00:00 |
|
Sarah Griffiths
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b6159b2c26
|
nf version
|
2023-08-03 15:54:39 +00:00 |
|
Sarah Griffiths
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df6c9a2a31
|
CW-2313 remove condition sheet requirement
|
2023-07-10 16:45:32 +00:00 |
|
Sarah Griffiths
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d0e7fc4b26
|
CW-2308 remove real path use
|
2023-06-28 17:37:49 +00:00 |
|
Sarah Griffiths
|
9f449ae467
|
CW-2188 add test for denovo plus warnings
|
2023-06-14 13:21:27 +00:00 |
|
Sarah Griffiths
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ab275b6440
|
CW-1920-Annotation-file-types
|
2023-05-31 20:48:35 +00:00 |
|
Sarah Griffiths
|
8053448d61
|
CW-1882 CSV
|
2023-04-04 11:54:35 +00:00 |
|
Neil Horner
|
d8d8a791af
|
Glue
|
2023-02-24 14:42:57 +00:00 |
|
Sarah Griffiths
|
43e746f0ea
|
schema updates
|
2022-12-01 21:05:01 +00:00 |
|
Sarah Griffiths
|
cd1f97de4e
|
CW-1162 option to run DE without assembly transcriptome
|
2022-11-16 12:16:38 +00:00 |
|
Neil Horner
|
e339446a8a
|
Fix for when JAFFAL returns exit status 1 when no fusions are found
|
2022-11-15 19:56:46 +00:00 |
|
Sarah Griffiths
|
a111cae834
|
CW-1167: error if conditionsheet and sample sheet dont match
|
2022-11-15 14:59:43 +00:00 |
|
Sarah Griffiths
|
0758f4ab51
|
demo data de
|
2022-11-08 18:07:44 +00:00 |
|
Neil Horner
|
d537d7b33f
|
Template changes
|
2022-10-07 12:59:18 +00:00 |
|
Sarah Griffiths
|
c6b6121491
|
CW-649
|
2022-08-23 19:15:46 +00:00 |
|
Neil Horner
|
d477a747e6
|
Switch isoform table thresholding to just displaying to n rows based on coverage
|
2022-08-08 13:48:15 +00:00 |
|
Neil Horner
|
e63cc73b6c
|
Fusions
|
2022-08-01 19:07:20 +00:00 |
|
Neil Horner
|
956c80573a
|
Fusions
|
2022-08-01 12:01:01 +00:00 |
|
Matt Parker
|
0f38613c6a
|
metamap-fastqingress
|
2022-07-21 12:28:45 +01:00 |
|
Sarah Griffiths
|
fa1818a81d
|
template updates
|
2022-07-07 19:14:52 +00:00 |
|
Neil Horner
|
d97e84cdc1
|
Epi2melabs pychopper
|
2022-06-01 12:08:00 +00:00 |
|
Neil Horner
|
3b69e64c4f
|
Github issues
|
2022-04-11 15:08:47 +00:00 |
|
Neil Horner
|
07275010c0
|
Fnames
|
2022-04-06 09:45:25 +00:00 |
|
Neil Horner
|
c2a0f8dc21
|
Re-add ability to do direct RNA
|
2022-04-05 18:04:16 +00:00 |
|
Neil Horner
|
f45fa8f2f2
|
Add to output process
|
2022-03-02 15:08:06 +00:00 |
|
Neil Horner
|
4d91b738e1
|
Post cw460
|
2022-03-02 14:15:39 +00:00 |
|
Neil Horner
|
03b8ba51f6
|
Denovo bug fixes
|
2022-03-02 11:34:21 +00:00 |
|
Neil Horner
|
7e33eb2c3b
|
Moved fiterable table into aplanat and general tidy up
|
2022-02-28 14:17:46 +00:00 |
|
Neil Horner
|
5dfbb0f38a
|
Merge de novo pipeline
|
2022-01-26 15:54:55 +00:00 |
|
Neil Horner
|
458ac5d274
|
Initial port of ref-isoforms to Nextflow
|
2021-12-08 14:34:07 +00:00 |
|
Chris Wright
|
e486b98a2c
|
add schema
|
2021-09-28 15:11:18 +01:00 |
|
Sarah Griffiths
|
2be5b01cc8
|
align parameters
|
2021-09-10 13:59:43 +00:00 |
|
Sarah Griffiths
|
167deee265
|
CW-244 optional report name
|
2021-09-09 13:39:17 +00:00 |
|