Sam Nicholls
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c21588761b
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wf-transcriptomes v2.0.0
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2026-06-09 11:58:17 +00:00 |
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Sam Nicholls
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bca0f01bf6
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Tidy params
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2026-05-27 15:40:53 +00:00 |
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Sam Nicholls
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74cbe196b2
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Merge branch 'fix-ci-test-2' into 'dev'
Restore modkit test with smaller gtf, fix join error
See merge request epi2melabs/workflows/wf-transcriptomes!305
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2026-05-26 20:12:45 +00:00 |
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Sam Nicholls
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b6f9efd9ae
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Restore modkit test with smaller gtf, fix join error
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2026-05-26 20:12:45 +00:00 |
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Sam Nicholls
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efbe4d007c
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Shorten workflow names for log
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2026-05-26 20:12:38 +00:00 |
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Kiah McIntosh
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1f456da61d
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SQANTI3 results in report [CW-7238]
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2026-05-22 15:28:21 +00:00 |
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Neil Horner
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d9c9cc6765
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Add gene name to TSV outputs [CW-7160]
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2026-05-22 10:23:21 +00:00 |
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Kiah McIntosh
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759cb9d868
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Skip cohort processes when n=1 [CW-7208]
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2026-05-21 16:19:18 +00:00 |
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Kiah McIntosh
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d124d8ba73
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Sort joint bambu inputs to fix caching [CW-7264]
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2026-05-20 16:31:24 +00:00 |
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Natalia Garcia
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dc0ebf3a52
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Simplify reference handling through the workflow prepareAnnotation [CW-7232]
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2026-05-20 12:49:08 +00:00 |
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Sam Nicholls
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db744dbe81
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Scatter-gather bambu quant [CW-7201]
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2026-05-18 12:29:48 +00:00 |
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Chris Wright
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c21c609017
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Return the correct annotation
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2026-05-16 17:02:03 +01:00 |
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Chris Wright
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5af948dabf
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[CW-7214] Tidy up CLI parsing
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2026-05-14 17:41:21 +00:00 |
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Sam Nicholls
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678f1de3f1
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Use value channels for refs crossing samples
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2026-05-14 17:18:57 +00:00 |
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Sam Nicholls
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06d77b2543
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Use new alignment ingress [CW-7186][CW-7202][CW-7229]
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2026-05-14 09:12:38 +00:00 |
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Kiah McIntosh
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c783fdf6c6
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Increase prepareAnnotationReference memory [CW-7185]
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2026-05-08 21:04:12 +00:00 |
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Chris Wright
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3e0dfd21e2
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[CW-7166] [CW-7169] Reference and annotation preparation
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2026-05-07 10:09:36 +00:00 |
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Chris Wright
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63d9d14f17
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Fix DE validation gating and per-sample NDR
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2026-05-05 18:42:18 +01:00 |
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Chris Wright
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f180b9e331
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[CW-7161] Add workflow-local R test infrastructure
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2026-05-05 17:10:10 +00:00 |
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Chris Wright
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43cf5bf42a
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Refresh workflow to use bambu, sqanti, and dexseq
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2026-05-05 14:10:04 +00:00 |
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