Sarah Griffiths
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b6159b2c26
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nf version
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2023-08-03 15:54:39 +00:00 |
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Sarah Griffiths
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df6c9a2a31
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CW-2313 remove condition sheet requirement
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2023-07-10 16:45:32 +00:00 |
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Sarah Griffiths
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d0e7fc4b26
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CW-2308 remove real path use
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2023-06-28 17:37:49 +00:00 |
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Sarah Griffiths
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9f449ae467
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CW-2188 add test for denovo plus warnings
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2023-06-14 13:21:27 +00:00 |
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Sarah Griffiths
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ab275b6440
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CW-1920-Annotation-file-types
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2023-05-31 20:48:35 +00:00 |
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Sarah Griffiths
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8053448d61
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CW-1882 CSV
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2023-04-04 11:54:35 +00:00 |
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Neil Horner
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d8d8a791af
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Glue
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2023-02-24 14:42:57 +00:00 |
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Sarah Griffiths
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43e746f0ea
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schema updates
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2022-12-01 21:05:01 +00:00 |
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Sarah Griffiths
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cd1f97de4e
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CW-1162 option to run DE without assembly transcriptome
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2022-11-16 12:16:38 +00:00 |
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Neil Horner
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e339446a8a
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Fix for when JAFFAL returns exit status 1 when no fusions are found
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2022-11-15 19:56:46 +00:00 |
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Sarah Griffiths
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a111cae834
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CW-1167: error if conditionsheet and sample sheet dont match
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2022-11-15 14:59:43 +00:00 |
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Sarah Griffiths
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0758f4ab51
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demo data de
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2022-11-08 18:07:44 +00:00 |
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Neil Horner
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d537d7b33f
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Template changes
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2022-10-07 12:59:18 +00:00 |
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Sarah Griffiths
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c6b6121491
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CW-649
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2022-08-23 19:15:46 +00:00 |
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Neil Horner
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d477a747e6
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Switch isoform table thresholding to just displaying to n rows based on coverage
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2022-08-08 13:48:15 +00:00 |
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Neil Horner
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e63cc73b6c
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Fusions
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2022-08-01 19:07:20 +00:00 |
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Neil Horner
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956c80573a
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Fusions
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2022-08-01 12:01:01 +00:00 |
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Matt Parker
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0f38613c6a
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metamap-fastqingress
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2022-07-21 12:28:45 +01:00 |
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Sarah Griffiths
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fa1818a81d
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template updates
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2022-07-07 19:14:52 +00:00 |
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Neil Horner
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d97e84cdc1
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Epi2melabs pychopper
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2022-06-01 12:08:00 +00:00 |
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Neil Horner
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3b69e64c4f
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Github issues
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2022-04-11 15:08:47 +00:00 |
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Neil Horner
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07275010c0
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Fnames
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2022-04-06 09:45:25 +00:00 |
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Neil Horner
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c2a0f8dc21
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Re-add ability to do direct RNA
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2022-04-05 18:04:16 +00:00 |
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Neil Horner
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f45fa8f2f2
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Add to output process
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2022-03-02 15:08:06 +00:00 |
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Neil Horner
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4d91b738e1
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Post cw460
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2022-03-02 14:15:39 +00:00 |
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Neil Horner
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03b8ba51f6
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Denovo bug fixes
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2022-03-02 11:34:21 +00:00 |
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Neil Horner
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7e33eb2c3b
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Moved fiterable table into aplanat and general tidy up
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2022-02-28 14:17:46 +00:00 |
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Neil Horner
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5dfbb0f38a
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Merge de novo pipeline
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2022-01-26 15:54:55 +00:00 |
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Neil Horner
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458ac5d274
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Initial port of ref-isoforms to Nextflow
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2021-12-08 14:34:07 +00:00 |
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Chris Wright
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e486b98a2c
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add schema
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2021-09-28 15:11:18 +01:00 |
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Sarah Griffiths
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2be5b01cc8
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align parameters
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2021-09-10 13:59:43 +00:00 |
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Sarah Griffiths
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167deee265
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CW-244 optional report name
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2021-09-09 13:39:17 +00:00 |
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Karhide
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ca5111b287
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Add params table in report and process
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2021-07-29 12:32:19 +01:00 |
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Chris Wright
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8afc348434
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Fix version file passing
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2021-07-23 17:34:46 +01:00 |
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Chris Wright
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635b18121b
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Fix typos
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2021-07-23 17:02:03 +01:00 |
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Chris Wright
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b61a1c0f5f
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Update version reporting
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2021-07-23 16:49:32 +01:00 |
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Chris Wright
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2a1ff88cc7
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add fastqingress module
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2021-07-12 21:15:03 +01:00 |
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Chris Wright
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62afff20c4
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Add aws batch profile
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2021-03-29 18:10:53 +01:00 |
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Chris Wright
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d1901bb16f
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rename report
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2021-03-23 16:18:53 +00:00 |
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Chris Wright
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e8e584d451
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Set fastq option straight
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2021-03-19 11:22:10 +00:00 |
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Thomas Rich
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e59e0df6c6
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Update main.nf to add an n to the shebang
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2021-03-04 09:29:55 +00:00 |
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Chris Wright
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ed1fc2c9fd
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Add larger test data and sample report
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2021-03-01 11:44:41 +00:00 |
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Chris Wright
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5c60ad6779
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Backport additions from wf-artic
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2021-02-24 17:45:39 +00:00 |
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