Neil Horner
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722d736f24
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Report minor fixes [CW-7281]
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2026-05-27 13:20:41 +00:00 |
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Sam Nicholls
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4bc3cf727f
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Per-sample mod summary
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2026-05-27 08:11:02 +00:00 |
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Neil Horner
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abf467e528
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Merge branch '20_volcano_points_cw-7277' into 'dev'
Use all point for volcano and tables [CW-7277]
See merge request epi2melabs/workflows/wf-transcriptomes!300
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2026-05-26 17:12:20 +00:00 |
|
Neil Horner
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01e8652317
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Use all point for volcano and tables [CW-7277]
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2026-05-26 17:12:20 +00:00 |
|
Neil Horner
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fa884c71c1
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Clustering plots low data [CW-7275]
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2026-05-26 17:10:46 +00:00 |
|
Neil Horner
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020d555219
|
Add the missing annotation ref summary [CW-7271]
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2026-05-22 17:05:56 +00:00 |
|
Kiah McIntosh
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1f456da61d
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SQANTI3 results in report [CW-7238]
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2026-05-22 15:28:21 +00:00 |
|
Neil Horner
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5823f04809
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[CW-7211] Hierarchical plot + PCA
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2026-05-22 14:34:50 +00:00 |
|
Neil Horner
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f45056c438
|
Report glow up 2 [CW-7207]
|
2026-05-22 11:55:44 +00:00 |
|
Kiah McIntosh
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759cb9d868
|
Skip cohort processes when n=1 [CW-7208]
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2026-05-21 16:19:18 +00:00 |
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Neil Horner
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7194b38360
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[CW-7207] Volcanic
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2026-05-20 12:31:06 +00:00 |
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Chris Wright
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68809a0147
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[CW-7250] fix up typography
|
2026-05-18 15:14:53 +00:00 |
|
Sam Nicholls
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db744dbe81
|
Scatter-gather bambu quant [CW-7201]
|
2026-05-18 12:29:48 +00:00 |
|
Chris Wright
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8f093ed675
|
[CW-7221] Fix various pathological cases
|
2026-05-18 10:58:18 +00:00 |
|
Sam Nicholls
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06d77b2543
|
Use new alignment ingress [CW-7186][CW-7202][CW-7229]
|
2026-05-14 09:12:38 +00:00 |
|
Chris Wright
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f2458c5603
|
[CW-7172] Improve testing and reporting on differential analysis analysis
|
2026-05-11 09:42:54 +00:00 |
|
Chris Wright
|
3e0dfd21e2
|
[CW-7166] [CW-7169] Reference and annotation preparation
|
2026-05-07 10:09:36 +00:00 |
|
Chris Wright
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43cf5bf42a
|
Refresh workflow to use bambu, sqanti, and dexseq
|
2026-05-05 14:10:04 +00:00 |
|
Sarah Griffiths
|
c1f784ad04
|
fix memory issue by replacing seq alignment stats with flagstat [CW-5858]
|
2025-03-31 09:20:35 +00:00 |
|
Neil Horner
|
c8c5922965
|
Access to undefined channel output bug CW-5398
|
2024-12-13 11:51:04 +00:00 |
|
Neil Horner
|
0a5c39cdf4
|
Account for stringtie multigene transcript artefacts
|
2024-12-12 14:30:31 +00:00 |
|
Neil Horner
|
624c16a3b1
|
Update permissions
|
2024-12-02 12:55:51 +00:00 |
|
Neil Horner
|
5c4780a1b2
|
Update report CW-3077
|
2024-10-25 15:18:05 +00:00 |
|
Neil Horner
|
0200514536
|
Remove fusion detection [CW-4552]
|
2024-08-06 20:20:19 +00:00 |
|
Neil Horner
|
bb9acf55be
|
Resolve CW-3468 "Incorrect ids"
|
2024-02-13 08:48:21 +00:00 |
|
Neil Horner
|
d5b0cc6203
|
JAFFAL resources
|
2024-02-12 15:25:19 +00:00 |
|
Neil Horner
|
fdb938a147
|
Publish isoforms table
|
2024-02-09 10:59:01 +00:00 |
|
Sarah Griffiths
|
1be77ba77f
|
CW-3075 improve counts output files
|
2024-02-02 10:38:50 +00:00 |
|
Sam Nicholls
|
bb99170130
|
Template updates [CW-1564][CW-2303][CW-2855]
|
2023-10-16 14:17:32 +00:00 |
|
Sarah Griffiths
|
f683d44411
|
CW-2769 remove denovo
|
2023-09-27 08:02:00 +00:00 |
|
Sarah Griffiths
|
ab850ac67f
|
tidy up DE outputs
|
2023-08-10 10:05:11 +00:00 |
|
Sarah Griffiths
|
f86b74a494
|
CW-2217 fix ordering of sample_ids
|
2023-07-12 11:05:34 +00:00 |
|
Sarah Griffiths
|
8053448d61
|
CW-1882 CSV
|
2023-04-04 11:54:35 +00:00 |
|
Neil Horner
|
d8d8a791af
|
Glue
|
2023-02-24 14:42:57 +00:00 |
|