Kiah McIntosh
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90e6453a8f
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Template update v5.6.3 [CW-6859]
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2025-12-05 18:16:58 +00:00 |
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Sarah Griffiths
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01387abb63
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Update CHANGELOG.md
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2025-10-17 09:57:39 +00:00 |
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Sarah Griffiths
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25b88c1321
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tag v1.7.2
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2025-10-17 08:43:44 +00:00 |
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Sarah Griffiths
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e83c92a0e5
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tag v1.7.1
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2025-08-01 15:02:39 +00:00 |
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Sarah Griffiths
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62e4266040
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Output dexseq file [CW-6285]
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2025-07-29 08:54:20 +00:00 |
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Sarah Griffiths
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85b767358c
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Filter out unstranded annotations and log warning [CW-6125]
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2025-06-20 08:43:15 +00:00 |
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Neil Horner
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b2ac1edbb9
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Container update CW-5998
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2025-05-16 08:38:28 +00:00 |
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Neil Horner
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19b54ba2ff
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Fix hyphens in sample alias CW-5484
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2025-05-14 13:55:01 +00:00 |
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Neil Horner
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c84a197da5
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Tu 5.6.1 [CW-6099]
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2025-05-09 07:05:34 +00:00 |
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Neil Horner
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18bf1d5b19
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Template update 5.6.0 [CW-6070]
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2025-05-06 10:23:01 +00:00 |
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Sarah Griffiths
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11c9221edc
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memory ci config
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2025-04-15 11:20:42 +00:00 |
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Sarah Griffiths
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00c2e9a18b
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Fix aws/docker demo cmd [CW-5950]
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2025-04-11 13:22:48 +00:00 |
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Sarah Griffiths
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390739cf8a
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Output BAMS in all cases apart from transcriptome-source precomputed [CW-5911]
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2025-04-03 12:57:58 +00:00 |
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Sarah Griffiths
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c1f784ad04
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fix memory issue by replacing seq alignment stats with flagstat [CW-5858]
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2025-03-31 09:20:35 +00:00 |
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Sarah Griffiths
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d5de051fd4
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Only use exons in DE analysis [CW-5786]
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2025-03-28 09:58:05 +00:00 |
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Sarah Griffiths
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f9bd2ab574
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Error message if ref_genome and ref_annotation mismatch CW-2965
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2025-03-14 19:06:47 +00:00 |
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Sarah Griffiths
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b4bba1432b
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Template v5.5.0 updates
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2025-03-14 11:04:18 +00:00 |
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Neil Horner
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b62722751f
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Fix overwritten DGE results file
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2025-02-18 17:05:45 +00:00 |
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Neil Horner
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e534921877
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Update schema
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2025-01-23 10:59:31 +00:00 |
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Neil Horner
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937a41f2cc
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Update memory for split_bam and build_minimap_index_transcriptome
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2025-01-03 17:06:38 +00:00 |
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Neil Horner
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39ef6ab16a
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bump version
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2025-01-03 12:44:08 +00:00 |
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Neil Horner
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0ec44d03bd
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Empty GFF bug CW-5438
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2024-12-18 15:01:33 +00:00 |
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Neil Horner
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7ca3110648
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Bump V1.6.0
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2024-12-13 13:11:56 +00:00 |
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Neil Horner
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c8c5922965
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Access to undefined channel output bug CW-5398
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2024-12-13 11:51:04 +00:00 |
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Neil Horner
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0a5c39cdf4
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Account for stringtie multigene transcript artefacts
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2024-12-12 14:30:31 +00:00 |
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Sarah Griffiths
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465d060933
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Actually output the dexseq file
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2024-11-05 11:51:40 +00:00 |
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Neil Horner
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5c4780a1b2
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Update report CW-3077
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2024-10-25 15:18:05 +00:00 |
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Sarah Griffiths
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d83807f38d
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Tidy de analysis
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2024-09-16 09:26:12 +00:00 |
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Sarah Griffiths
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7ced52c05b
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Template updates
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2024-09-11 12:47:01 +00:00 |
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Sarah Griffiths
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14fe76dabc
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CW-4613 IGV config
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2024-09-06 09:27:56 +00:00 |
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Neil Horner
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f62ec6c127
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Missed v from version
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2024-08-08 13:08:59 +01:00 |
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Neil Horner
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abc40d9015
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Add new cDNA kits
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2024-08-07 11:31:14 +00:00 |
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Neil Horner
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0200514536
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Remove fusion detection [CW-4552]
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2024-08-06 20:20:19 +00:00 |
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Neil Horner
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a5699b2945
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Bump v1.2.1
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2024-07-04 14:48:30 +00:00 |
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Neil Horner
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1fed562746
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Merge branch 'pychop_threads_CW-4010' into 'dev'
Give pychopper more threads
See merge request epi2melabs/workflows/wf-transcriptomes!174
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2024-06-25 14:11:28 +00:00 |
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Neil Horner
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411290d5a4
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Give pychopper more threads
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2024-06-25 14:11:28 +00:00 |
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Sarah Griffiths
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57c0f5b303
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Handle annotations with no strand CW-3998
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2024-06-25 13:08:32 +00:00 |
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Neil Horner
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515c8c0ed8
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Bump v1.2.0
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2024-06-04 17:28:29 +00:00 |
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Sarah Griffiths
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63e0fe6524
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change significance level to mark on MA plot
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2024-04-10 08:09:23 +00:00 |
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Sarah Griffiths
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bd5c89efc5
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Tag v1.1.1
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2024-03-05 11:47:23 +00:00 |
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Sarah Griffiths
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6a14a1d85b
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Remove need to retry based on GTF/GFF
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2024-02-22 09:34:38 +00:00 |
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Sarah Griffiths
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e3b1967872
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Improve ref annotation transcript id version handling
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2024-02-19 10:29:04 +00:00 |
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Sarah Griffiths
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e30d3aec98
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DE_analysis params change input types to numeric
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2024-02-16 10:23:15 +00:00 |
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Neil Horner
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bb9acf55be
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Resolve CW-3468 "Incorrect ids"
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2024-02-13 08:48:21 +00:00 |
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Neil Horner
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d5b0cc6203
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JAFFAL resources
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2024-02-12 15:25:19 +00:00 |
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Sarah Griffiths
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4bb02049ec
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Resource updates
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2024-02-12 10:20:02 +00:00 |
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Neil Horner
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fdb938a147
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Publish isoforms table
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2024-02-09 10:59:01 +00:00 |
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Sarah Griffiths
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bf136640ed
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No ref annotation workflow still completes
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2024-02-07 22:50:04 +00:00 |
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Sarah Griffiths
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1be77ba77f
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CW-3075 improve counts output files
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2024-02-02 10:38:50 +00:00 |
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Neil Horner
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f111755d12
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Resolve CW-3327 "Mapping 1 thread"
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2024-01-18 19:40:14 +00:00 |
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