Commit Graph

12 Commits

Author SHA1 Message Date
Kiah McIntosh
d124d8ba73 Sort joint bambu inputs to fix caching [CW-7264] 2026-05-20 16:31:24 +00:00
Natalia Garcia
dc0ebf3a52 Simplify reference handling through the workflow prepareAnnotation [CW-7232] 2026-05-20 12:49:08 +00:00
Sam Nicholls
db744dbe81 Scatter-gather bambu quant [CW-7201] 2026-05-18 12:29:48 +00:00
Chris Wright
c21c609017
Return the correct annotation 2026-05-16 17:02:03 +01:00
Chris Wright
5af948dabf [CW-7214] Tidy up CLI parsing 2026-05-14 17:41:21 +00:00
Sam Nicholls
678f1de3f1 Use value channels for refs crossing samples 2026-05-14 17:18:57 +00:00
Sam Nicholls
06d77b2543 Use new alignment ingress [CW-7186][CW-7202][CW-7229] 2026-05-14 09:12:38 +00:00
Kiah McIntosh
c783fdf6c6 Increase prepareAnnotationReference memory [CW-7185] 2026-05-08 21:04:12 +00:00
Chris Wright
3e0dfd21e2 [CW-7166] [CW-7169] Reference and annotation preparation 2026-05-07 10:09:36 +00:00
Chris Wright
63d9d14f17
Fix DE validation gating and per-sample NDR 2026-05-05 18:42:18 +01:00
Chris Wright
f180b9e331 [CW-7161] Add workflow-local R test infrastructure 2026-05-05 17:10:10 +00:00
Chris Wright
43cf5bf42a Refresh workflow to use bambu, sqanti, and dexseq 2026-05-05 14:10:04 +00:00