Commit Graph

90 Commits

Author SHA1 Message Date
Sarah Griffiths
d83807f38d Tidy de analysis 2024-09-16 09:26:12 +00:00
Sarah Griffiths
7ced52c05b Template updates 2024-09-11 12:47:01 +00:00
Sarah Griffiths
14fe76dabc CW-4613 IGV config 2024-09-06 09:27:56 +00:00
Neil Horner
abc40d9015 Add new cDNA kits 2024-08-07 11:31:14 +00:00
Neil Horner
0200514536 Remove fusion detection [CW-4552] 2024-08-06 20:20:19 +00:00
Neil Horner
a5699b2945 Bump v1.2.1 2024-07-04 14:48:30 +00:00
Neil Horner
c662293317 Template update 2024-06-27 16:13:55 +01:00
Neil Horner
515c8c0ed8 Bump v1.2.0 2024-06-04 17:28:29 +00:00
Neil Horner
cfa41f16d0 BAM input CW-3512 2024-06-04 09:25:31 +00:00
Neil Horner
e2585dcd11 Template update 2024 05 24 2024-05-30 19:40:11 +00:00
Sarah Griffiths
d7fcb2d5f7 Temp update 2024-05-10 08:42:12 +00:00
Sarah Griffiths
595aae4006 Template update 2024-04-03 09:47:29 +00:00
Sarah Griffiths
bd5c89efc5 Tag v1.1.1 2024-03-05 11:47:23 +00:00
Neil Horner
bb9acf55be Resolve CW-3468 "Incorrect ids" 2024-02-13 08:48:21 +00:00
Neil Horner
92cb357edc Template updates 2024 01 12 2024-01-16 11:48:09 +00:00
Sarah Griffiths
07b9edcb99 Temp up 2024-01-04 10:18:39 +00:00
Sarah Griffiths
45dc9efb49 example cmd update 2023-12-08 14:35:24 +00:00
Sarah Griffiths
3acf993586 de_analysis include in sample cmd 2023-12-08 09:32:07 +00:00
Sarah Griffiths
ed847d9a1f template update 2023-12-07 14:05:02 +00:00
Neil Horner
d01162025a Resolve CW-2369 2023-12-05 18:42:47 +00:00
Sarah Griffiths
35dc9dd722 pychopper parameters clear up 2023-12-04 21:12:57 +00:00
Sarah Griffiths
045a077fe1 docs update 2023-12-01 12:36:33 +00:00
Sarah Griffiths
b870078142 tag v0.4.2 2023-11-17 10:06:36 +00:00
Sam Nicholls
bb99170130 Template updates [CW-1564][CW-2303][CW-2855] 2023-10-16 14:17:32 +00:00
Neil Horner
25d2bfd07c Container pychop 2.7.9 2023-10-04 16:23:32 +00:00
Sarah Griffiths
fb6182c717 tag 2023-09-28 08:18:11 +00:00
Sarah Griffiths
f683d44411 CW-2769 remove denovo 2023-09-27 08:02:00 +00:00
Sarah Griffiths
7e2d0214e4 update version 2023-09-08 10:55:54 +00:00
Sarah Griffiths
4065a4d82f params update defaults 2023-09-06 08:00:10 +00:00
Sarah Griffiths
2bda37388c Update fastqingress.nf 2023-09-05 08:57:28 +00:00
Sarah Griffiths
2ce40ee2f0 common sha update and tag 2023-08-10 12:48:45 +00:00
Sarah Griffiths
d535778497 add titles 2023-08-08 11:18:15 +00:00
Sarah Griffiths
b6159b2c26 nf version 2023-08-03 15:54:39 +00:00
Sarah Griffiths
ec3c346fd8 fix and test for files with no gene id in attributes 2023-07-26 18:14:00 +00:00
Sarah Griffiths
a58d08b6c4 template updates 2023-07-25 08:33:01 +00:00
Sarah Griffiths
a3bc02888e tag v0.2.0 2023-07-12 08:21:11 +00:00
Sarah Griffiths
df6c9a2a31 CW-2313 remove condition sheet requirement 2023-07-10 16:45:32 +00:00
Sam Nicholls
542f822ca6 Reconcile template 2023-07-04 10:13:05 +00:00
Sarah Griffiths
9f449ae467 CW-2188 add test for denovo plus warnings 2023-06-14 13:21:27 +00:00
Sam Nicholls
e359561703 Update nextflowVersion to 22.10.8 2023-06-12 11:28:39 +01:00
Sarah Griffiths
ab275b6440 CW-1920-Annotation-file-types 2023-05-31 20:48:35 +00:00
Sarah Griffiths
970ffa9734 tag 2023-05-16 16:34:08 +00:00
Sarah Griffiths
a4c472062c tag 2023-04-06 08:28:13 +00:00
Sarah Griffiths
c3137f6ad6 remove MR sha 2023-04-04 13:11:54 +00:00
Sarah Griffiths
8053448d61 CW-1882 CSV 2023-04-04 11:54:35 +00:00
Neil Horner
39496c5f01 V0.1.9 bump 2023-02-27 09:32:16 +00:00
Neil Horner
d8d8a791af Glue 2023-02-24 14:42:57 +00:00
Julian Libiseller-Egger
136ece6a90 update manifest description to match workflow card in app 2022-12-05 21:04:41 +00:00
Sarah Griffiths
d3e48d4278 tag 2022-12-01 21:41:36 +00:00
Sarah Griffiths
43e746f0ea schema updates 2022-12-01 21:05:01 +00:00