Kiah McIntosh
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eab8ef1efe
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Use args for R script inputs [CW-3398]
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2025-02-07 08:42:49 +00:00 |
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Neil Horner
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937a41f2cc
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Update memory for split_bam and build_minimap_index_transcriptome
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2025-01-03 17:06:38 +00:00 |
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Neil Horner
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39ef6ab16a
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bump version
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2025-01-03 12:44:08 +00:00 |
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Neil Horner
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7ca3110648
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Bump V1.6.0
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2024-12-13 13:11:56 +00:00 |
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Neil Horner
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0a5c39cdf4
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Account for stringtie multigene transcript artefacts
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2024-12-12 14:30:31 +00:00 |
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Neil Horner
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d38c7f3661
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template update
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2024-12-05 10:26:25 +00:00 |
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Sarah Griffiths
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465d060933
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Actually output the dexseq file
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2024-11-05 11:51:40 +00:00 |
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Sarah Griffiths
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d83807f38d
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Tidy de analysis
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2024-09-16 09:26:12 +00:00 |
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Sarah Griffiths
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7ced52c05b
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Template updates
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2024-09-11 12:47:01 +00:00 |
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Sarah Griffiths
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14fe76dabc
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CW-4613 IGV config
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2024-09-06 09:27:56 +00:00 |
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Neil Horner
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abc40d9015
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Add new cDNA kits
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2024-08-07 11:31:14 +00:00 |
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Neil Horner
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0200514536
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Remove fusion detection [CW-4552]
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2024-08-06 20:20:19 +00:00 |
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Neil Horner
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a5699b2945
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Bump v1.2.1
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2024-07-04 14:48:30 +00:00 |
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Neil Horner
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c662293317
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Template update
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2024-06-27 16:13:55 +01:00 |
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Neil Horner
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515c8c0ed8
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Bump v1.2.0
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2024-06-04 17:28:29 +00:00 |
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Neil Horner
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cfa41f16d0
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BAM input CW-3512
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2024-06-04 09:25:31 +00:00 |
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Neil Horner
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e2585dcd11
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Template update 2024 05 24
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2024-05-30 19:40:11 +00:00 |
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Sarah Griffiths
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d7fcb2d5f7
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Temp update
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2024-05-10 08:42:12 +00:00 |
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Sarah Griffiths
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595aae4006
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Template update
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2024-04-03 09:47:29 +00:00 |
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Sarah Griffiths
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bd5c89efc5
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Tag v1.1.1
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2024-03-05 11:47:23 +00:00 |
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Neil Horner
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bb9acf55be
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Resolve CW-3468 "Incorrect ids"
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2024-02-13 08:48:21 +00:00 |
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Neil Horner
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92cb357edc
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Template updates 2024 01 12
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2024-01-16 11:48:09 +00:00 |
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Sarah Griffiths
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07b9edcb99
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Temp up
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2024-01-04 10:18:39 +00:00 |
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Sarah Griffiths
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45dc9efb49
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example cmd update
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2023-12-08 14:35:24 +00:00 |
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Sarah Griffiths
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3acf993586
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de_analysis include in sample cmd
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2023-12-08 09:32:07 +00:00 |
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Sarah Griffiths
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ed847d9a1f
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template update
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2023-12-07 14:05:02 +00:00 |
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Neil Horner
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d01162025a
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Resolve CW-2369
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2023-12-05 18:42:47 +00:00 |
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Sarah Griffiths
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35dc9dd722
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pychopper parameters clear up
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2023-12-04 21:12:57 +00:00 |
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Sarah Griffiths
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045a077fe1
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docs update
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2023-12-01 12:36:33 +00:00 |
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Sarah Griffiths
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b870078142
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tag v0.4.2
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2023-11-17 10:06:36 +00:00 |
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Sam Nicholls
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bb99170130
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Template updates [CW-1564][CW-2303][CW-2855]
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2023-10-16 14:17:32 +00:00 |
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Neil Horner
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25d2bfd07c
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Container pychop 2.7.9
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2023-10-04 16:23:32 +00:00 |
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Sarah Griffiths
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fb6182c717
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tag
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2023-09-28 08:18:11 +00:00 |
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Sarah Griffiths
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f683d44411
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CW-2769 remove denovo
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2023-09-27 08:02:00 +00:00 |
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Sarah Griffiths
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7e2d0214e4
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update version
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2023-09-08 10:55:54 +00:00 |
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Sarah Griffiths
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4065a4d82f
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params update defaults
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2023-09-06 08:00:10 +00:00 |
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Sarah Griffiths
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2bda37388c
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Update fastqingress.nf
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2023-09-05 08:57:28 +00:00 |
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Sarah Griffiths
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2ce40ee2f0
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common sha update and tag
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2023-08-10 12:48:45 +00:00 |
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Sarah Griffiths
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d535778497
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add titles
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2023-08-08 11:18:15 +00:00 |
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Sarah Griffiths
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b6159b2c26
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nf version
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2023-08-03 15:54:39 +00:00 |
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Sarah Griffiths
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ec3c346fd8
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fix and test for files with no gene id in attributes
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2023-07-26 18:14:00 +00:00 |
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Sarah Griffiths
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a58d08b6c4
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template updates
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2023-07-25 08:33:01 +00:00 |
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Sarah Griffiths
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a3bc02888e
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tag v0.2.0
|
2023-07-12 08:21:11 +00:00 |
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Sarah Griffiths
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df6c9a2a31
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CW-2313 remove condition sheet requirement
|
2023-07-10 16:45:32 +00:00 |
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Sam Nicholls
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542f822ca6
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Reconcile template
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2023-07-04 10:13:05 +00:00 |
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Sarah Griffiths
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9f449ae467
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CW-2188 add test for denovo plus warnings
|
2023-06-14 13:21:27 +00:00 |
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Sam Nicholls
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e359561703
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Update nextflowVersion to 22.10.8
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2023-06-12 11:28:39 +01:00 |
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Sarah Griffiths
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ab275b6440
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CW-1920-Annotation-file-types
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2023-05-31 20:48:35 +00:00 |
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Sarah Griffiths
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970ffa9734
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tag
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2023-05-16 16:34:08 +00:00 |
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Sarah Griffiths
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a4c472062c
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tag
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2023-04-06 08:28:13 +00:00 |
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