Sarah Griffiths
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ed847d9a1f
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template update
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2023-12-07 14:05:02 +00:00 |
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Neil Horner
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d01162025a
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Resolve CW-2369
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2023-12-05 18:42:47 +00:00 |
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Sarah Griffiths
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35dc9dd722
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pychopper parameters clear up
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2023-12-04 21:12:57 +00:00 |
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Sarah Griffiths
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045a077fe1
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docs update
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2023-12-01 12:36:33 +00:00 |
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Sarah Griffiths
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b870078142
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tag v0.4.2
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2023-11-17 10:06:36 +00:00 |
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Sam Nicholls
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bb99170130
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Template updates [CW-1564][CW-2303][CW-2855]
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2023-10-16 14:17:32 +00:00 |
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Neil Horner
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25d2bfd07c
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Container pychop 2.7.9
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2023-10-04 16:23:32 +00:00 |
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Sarah Griffiths
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fb6182c717
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tag
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2023-09-28 08:18:11 +00:00 |
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Sarah Griffiths
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f683d44411
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CW-2769 remove denovo
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2023-09-27 08:02:00 +00:00 |
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Sarah Griffiths
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7e2d0214e4
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update version
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2023-09-08 10:55:54 +00:00 |
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Sarah Griffiths
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4065a4d82f
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params update defaults
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2023-09-06 08:00:10 +00:00 |
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Sarah Griffiths
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2bda37388c
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Update fastqingress.nf
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2023-09-05 08:57:28 +00:00 |
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Sarah Griffiths
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2ce40ee2f0
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common sha update and tag
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2023-08-10 12:48:45 +00:00 |
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Sarah Griffiths
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d535778497
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add titles
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2023-08-08 11:18:15 +00:00 |
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Sarah Griffiths
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b6159b2c26
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nf version
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2023-08-03 15:54:39 +00:00 |
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Sarah Griffiths
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ec3c346fd8
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fix and test for files with no gene id in attributes
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2023-07-26 18:14:00 +00:00 |
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Sarah Griffiths
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a58d08b6c4
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template updates
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2023-07-25 08:33:01 +00:00 |
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Sarah Griffiths
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a3bc02888e
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tag v0.2.0
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2023-07-12 08:21:11 +00:00 |
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Sarah Griffiths
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df6c9a2a31
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CW-2313 remove condition sheet requirement
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2023-07-10 16:45:32 +00:00 |
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Sam Nicholls
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542f822ca6
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Reconcile template
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2023-07-04 10:13:05 +00:00 |
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Sarah Griffiths
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9f449ae467
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CW-2188 add test for denovo plus warnings
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2023-06-14 13:21:27 +00:00 |
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Sam Nicholls
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e359561703
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Update nextflowVersion to 22.10.8
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2023-06-12 11:28:39 +01:00 |
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Sarah Griffiths
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ab275b6440
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CW-1920-Annotation-file-types
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2023-05-31 20:48:35 +00:00 |
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Sarah Griffiths
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970ffa9734
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tag
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2023-05-16 16:34:08 +00:00 |
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Sarah Griffiths
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a4c472062c
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tag
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2023-04-06 08:28:13 +00:00 |
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Sarah Griffiths
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c3137f6ad6
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remove MR sha
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2023-04-04 13:11:54 +00:00 |
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Sarah Griffiths
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8053448d61
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CW-1882 CSV
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2023-04-04 11:54:35 +00:00 |
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Neil Horner
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39496c5f01
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V0.1.9 bump
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2023-02-27 09:32:16 +00:00 |
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Neil Horner
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d8d8a791af
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Glue
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2023-02-24 14:42:57 +00:00 |
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Julian Libiseller-Egger
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136ece6a90
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update manifest description to match workflow card in app
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2022-12-05 21:04:41 +00:00 |
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Sarah Griffiths
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d3e48d4278
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tag
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2022-12-01 21:41:36 +00:00 |
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Sarah Griffiths
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43e746f0ea
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schema updates
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2022-12-01 21:05:01 +00:00 |
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Sarah Griffiths
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5477e721a2
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CW-1170 Fix failed to plot
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2022-11-16 20:11:44 +00:00 |
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Sarah Griffiths
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cd1f97de4e
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CW-1162 option to run DE without assembly transcriptome
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2022-11-16 12:16:38 +00:00 |
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Sarah Griffiths
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0758f4ab51
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demo data de
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2022-11-08 18:07:44 +00:00 |
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Neil Horner
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d8834b7573
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Verison bump
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2022-08-24 11:38:20 +01:00 |
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Sarah Griffiths
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c6b6121491
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CW-649
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2022-08-23 19:15:46 +00:00 |
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Neil Horner
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d477a747e6
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Switch isoform table thresholding to just displaying to n rows based on coverage
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2022-08-08 13:48:15 +00:00 |
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Neil Horner
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d6f76de4f4
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Update nextflow.config
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2022-08-01 16:13:32 +00:00 |
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Neil Horner
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956c80573a
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Fusions
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2022-08-01 12:01:01 +00:00 |
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Neil Horner
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f01b879be9
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nf-core lint fixes
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2022-07-26 09:54:32 +00:00 |
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Sarah Griffiths
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fa1818a81d
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template updates
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2022-07-07 19:14:52 +00:00 |
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Neil Horner
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d97e84cdc1
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Epi2melabs pychopper
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2022-06-01 12:08:00 +00:00 |
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Matt Parker
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e9d750bcee
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ignore wf param
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2022-05-26 10:40:51 +01:00 |
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Matt Parker
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79a4bec16d
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Zero hour 9:00 a.m.
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2022-05-26 08:27:38 +01:00 |
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Neil Horner
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3b69e64c4f
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Github issues
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2022-04-11 15:08:47 +00:00 |
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Neil Horner
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c2a0f8dc21
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Re-add ability to do direct RNA
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2022-04-05 18:04:16 +00:00 |
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Neil Horner
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7e33eb2c3b
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Moved fiterable table into aplanat and general tidy up
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2022-02-28 14:17:46 +00:00 |
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Neil Horner
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5dfbb0f38a
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Merge de novo pipeline
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2022-01-26 15:54:55 +00:00 |
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Neil Horner
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458ac5d274
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Initial port of ref-isoforms to Nextflow
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2021-12-08 14:34:07 +00:00 |
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