Harrison Pirt
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d7a0e96a44
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wf-transcriptomes 2.0.0-rc1
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2026-05-28 10:54:49 +00:00 |
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Sam Nicholls
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bca0f01bf6
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Tidy params
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2026-05-27 15:40:53 +00:00 |
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Sarah Griffiths
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3ca4511b5b
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Add force alignment option [CW-7274]
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2026-05-26 14:44:50 +00:00 |
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Rory Munro
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86d100c869
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Bump modkit sha version [CW-7273]
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2026-05-26 12:31:05 +00:00 |
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Sam Nicholls
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175e6c9437
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Per-sample pileup counts [CW-7196]
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2026-05-26 09:52:38 +00:00 |
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Kiah McIntosh
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e35810dcea
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Remove pychopper remnants [CW-7246]
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2026-05-18 12:54:01 +00:00 |
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Chris Wright
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3d7d49795e
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[CW-7235] cast ? to . in gffs
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2026-05-16 13:22:47 +00:00 |
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Sam Nicholls
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06d77b2543
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Use new alignment ingress [CW-7186][CW-7202][CW-7229]
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2026-05-14 09:12:38 +00:00 |
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Neil Horner
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543b39bd79
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No bioc version check [CW-7194]
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2026-05-08 14:08:37 +00:00 |
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Chris Wright
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f180b9e331
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[CW-7161] Add workflow-local R test infrastructure
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2026-05-05 17:10:10 +00:00 |
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Chris Wright
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43cf5bf42a
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Refresh workflow to use bambu, sqanti, and dexseq
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2026-05-05 14:10:04 +00:00 |
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Kiah McIntosh
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057fc0e886
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Update common sha
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2026-04-17 14:01:28 +00:00 |
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Kiah McIntosh
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90e6453a8f
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Template update v5.6.3 [CW-6859]
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2025-12-05 18:16:58 +00:00 |
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Sarah Griffiths
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25b88c1321
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tag v1.7.2
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2025-10-17 08:43:44 +00:00 |
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Sarah Griffiths
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e83c92a0e5
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tag v1.7.1
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2025-08-01 15:02:39 +00:00 |
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Sarah Griffiths
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62e4266040
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Output dexseq file [CW-6285]
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2025-07-29 08:54:20 +00:00 |
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Neil Horner
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b2ac1edbb9
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Container update CW-5998
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2025-05-16 08:38:28 +00:00 |
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Neil Horner
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18bf1d5b19
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Template update 5.6.0 [CW-6070]
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2025-05-06 10:23:01 +00:00 |
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Sarah Griffiths
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11c9221edc
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memory ci config
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2025-04-15 11:20:42 +00:00 |
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Sarah Griffiths
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00c2e9a18b
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Fix aws/docker demo cmd [CW-5950]
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2025-04-11 13:22:48 +00:00 |
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Sarah Griffiths
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b4bba1432b
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Template v5.5.0 updates
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2025-03-14 11:04:18 +00:00 |
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Natalia Garcia
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122ad8403a
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Update workflow tags [CW-5563]
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2025-02-13 23:39:09 +00:00 |
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Kiah McIntosh
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eab8ef1efe
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Use args for R script inputs [CW-3398]
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2025-02-07 08:42:49 +00:00 |
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Neil Horner
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937a41f2cc
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Update memory for split_bam and build_minimap_index_transcriptome
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2025-01-03 17:06:38 +00:00 |
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Neil Horner
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39ef6ab16a
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bump version
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2025-01-03 12:44:08 +00:00 |
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Neil Horner
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7ca3110648
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Bump V1.6.0
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2024-12-13 13:11:56 +00:00 |
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Neil Horner
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0a5c39cdf4
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Account for stringtie multigene transcript artefacts
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2024-12-12 14:30:31 +00:00 |
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Neil Horner
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d38c7f3661
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template update
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2024-12-05 10:26:25 +00:00 |
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Sarah Griffiths
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465d060933
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Actually output the dexseq file
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2024-11-05 11:51:40 +00:00 |
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Sarah Griffiths
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d83807f38d
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Tidy de analysis
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2024-09-16 09:26:12 +00:00 |
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Sarah Griffiths
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7ced52c05b
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Template updates
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2024-09-11 12:47:01 +00:00 |
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Sarah Griffiths
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14fe76dabc
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CW-4613 IGV config
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2024-09-06 09:27:56 +00:00 |
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Neil Horner
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abc40d9015
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Add new cDNA kits
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2024-08-07 11:31:14 +00:00 |
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Neil Horner
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0200514536
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Remove fusion detection [CW-4552]
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2024-08-06 20:20:19 +00:00 |
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Neil Horner
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a5699b2945
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Bump v1.2.1
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2024-07-04 14:48:30 +00:00 |
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Neil Horner
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c662293317
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Template update
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2024-06-27 16:13:55 +01:00 |
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Neil Horner
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515c8c0ed8
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Bump v1.2.0
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2024-06-04 17:28:29 +00:00 |
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Neil Horner
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cfa41f16d0
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BAM input CW-3512
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2024-06-04 09:25:31 +00:00 |
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Neil Horner
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e2585dcd11
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Template update 2024 05 24
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2024-05-30 19:40:11 +00:00 |
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Sarah Griffiths
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d7fcb2d5f7
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Temp update
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2024-05-10 08:42:12 +00:00 |
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Sarah Griffiths
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595aae4006
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Template update
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2024-04-03 09:47:29 +00:00 |
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Sarah Griffiths
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bd5c89efc5
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Tag v1.1.1
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2024-03-05 11:47:23 +00:00 |
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Neil Horner
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bb9acf55be
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Resolve CW-3468 "Incorrect ids"
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2024-02-13 08:48:21 +00:00 |
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Neil Horner
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92cb357edc
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Template updates 2024 01 12
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2024-01-16 11:48:09 +00:00 |
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Sarah Griffiths
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07b9edcb99
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Temp up
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2024-01-04 10:18:39 +00:00 |
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Sarah Griffiths
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45dc9efb49
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example cmd update
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2023-12-08 14:35:24 +00:00 |
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Sarah Griffiths
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3acf993586
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de_analysis include in sample cmd
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2023-12-08 09:32:07 +00:00 |
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Sarah Griffiths
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ed847d9a1f
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template update
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2023-12-07 14:05:02 +00:00 |
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Neil Horner
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d01162025a
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Resolve CW-2369
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2023-12-05 18:42:47 +00:00 |
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Sarah Griffiths
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35dc9dd722
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pychopper parameters clear up
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2023-12-04 21:12:57 +00:00 |
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