kfukuta/wf-transcriptomes-v202
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  • 14c6191766 Merge branch 'HELP-6233' into 'dev' Neil Horner 2023-06-16 10:08:48 +0000
  • 99d43b48b9 Standardise parameters in readme Neil Horner 2023-06-16 10:08:48 +0000
  • cb73e0a6cd Merge branch 'CW-2188-denovo-test' into 'dev' Sarah Griffiths 2023-06-14 13:21:27 +0000
  • 9f449ae467 CW-2188 add test for denovo plus warnings Sarah Griffiths 2023-06-14 13:21:27 +0000
  • 7d3b67acfd Merge branch 'cw-2224' into 'dev' Neil Horner 2023-06-12 15:19:25 +0000
  • e359561703 Update nextflowVersion to 22.10.8 Sam Nicholls 2023-06-12 11:28:39 +0100
  • 775d13d5b6 Merge branch 'typo' into 'dev' Neil Horner 2023-06-12 08:20:09 +0000
  • 3ac202d457 Typo Neil Horner 2023-06-12 09:03:29 +0100
  • fc642c9535 Merge branch 'template-update' into 'dev' Sarah Griffiths 2023-06-08 14:58:50 +0000
  • 61deb0715f wf-transcriptomes template update Sarah Griffiths 2023-06-08 14:58:50 +0000
  • 12429039d3 Merge branch 'CW-1920-annotation-file-types' into 'dev' Sarah Griffiths 2023-05-31 20:48:35 +0000
  • ab275b6440 CW-1920-Annotation-file-types Sarah Griffiths 2023-05-31 20:48:35 +0000
  • 2b95323598 Merge branch 'mac-ci-not-jaffal' into 'dev' Sarah Griffiths 2023-05-16 20:54:24 +0000
  • 1d5fcdd211 transcriptomes mac ci arm 64 Sarah Griffiths 2023-05-16 20:54:23 +0000
  • 8c7aabb5d1 Merge branch 'cw-2098' into 'dev' Matt Parker 2023-05-16 18:26:23 +0000
  • 970ffa9734 tag Sarah Griffiths 2023-05-16 16:34:08 +0000
  • 63bef44dcc Add AWS demo url configuration Sam Nicholls 2023-05-16 14:59:53 +0100
  • fcefe9e138 Merge branch 'template-updates' into 'dev' Sarah Griffiths 2023-05-09 10:09:33 +0000
  • 5df7e3c2cd template updates Sarah Griffiths 2023-05-09 10:09:33 +0000
  • 85e85409ef Merge branch 'tag' into 'dev' Sarah Griffiths 2023-04-06 08:28:13 +0000
  • a4c472062c tag Sarah Griffiths 2023-04-06 08:28:13 +0000
  • 9ed8e34f6b Merge branch 'remove-mr-sha' into 'dev' Sarah Griffiths 2023-04-04 15:58:21 +0000
  • c3137f6ad6 remove MR sha Sarah Griffiths 2023-04-04 13:11:54 +0000
  • dd2b282b8c Merge branch 'csv' into 'dev' Sarah Griffiths 2023-04-04 11:54:35 +0000
  • 8053448d61 CW-1882 CSV Sarah Griffiths 2023-04-04 11:54:35 +0000
  • 1b010a4eed Merge branch 'v0.1.9_bump' into 'dev' Neil Horner 2023-02-27 09:32:16 +0000
  • 39496c5f01 V0.1.9 bump Neil Horner 2023-02-27 09:32:16 +0000
  • 5c0a93bc17 Merge branch 'jaffal_docs' into 'dev' Neil Horner 2023-02-24 16:49:28 +0000
  • 94a2e2c28c Update docs to remove JAFFAL install instructions Neil Horner 2023-02-24 16:49:28 +0000
  • 00a784f04d Merge branch 'glue' into 'dev' Neil Horner 2023-02-24 14:42:58 +0000
  • d8d8a791af Glue Neil Horner 2023-02-24 14:42:57 +0000
  • bee88d5044 Merge branch 'update-manifest-description' into 'dev' Sam Nicholls 2022-12-05 21:04:42 +0000
  • 136ece6a90 update manifest description to match workflow card in app Julian Libiseller-Egger 2022-12-05 21:04:41 +0000
  • 93f95f7b4b Merge branch 'tag' into 'dev' Sarah Griffiths 2022-12-01 22:12:44 +0000
  • d3e48d4278 tag Sarah Griffiths 2022-12-01 21:41:36 +0000
  • 9f2477e8c4 Merge branch 'schema-updates' into 'dev' Sarah Griffiths 2022-12-01 21:05:01 +0000
  • 43e746f0ea schema updates Sarah Griffiths 2022-12-01 21:05:01 +0000
  • 14ee337036 Merge branch 'CW-1170' into 'dev' Sarah Griffiths 2022-11-16 20:11:50 +0000
  • 5477e721a2 CW-1170 Fix failed to plot Sarah Griffiths 2022-11-16 20:11:44 +0000
  • f852dde6ef Merge branch 'data-aws' into 'dev' Sarah Griffiths 2022-11-16 18:50:02 +0000
  • 5de212cf57 Move data to AWS Sarah Griffiths 2022-11-16 18:49:53 +0000
  • 9a8b197ef0 Merge branch 'CW-1162' into 'dev' Sarah Griffiths 2022-11-16 12:17:04 +0000
  • cd1f97de4e CW-1162 option to run DE without assembly transcriptome Sarah Griffiths 2022-11-16 12:16:38 +0000
  • 7040a043d4 Merge branch 'jaffal_crash' into 'dev' Neil Horner 2022-11-15 19:56:48 +0000
  • e339446a8a Fix for when JAFFAL returns exit status 1 when no fusions are found Neil Horner 2022-11-15 19:56:46 +0000
  • 10b3253bad Merge branch 'CW-1167' into 'dev' Sarah Griffiths 2022-11-15 14:59:54 +0000
  • a111cae834 CW-1167: error if conditionsheet and sample sheet dont match Sarah Griffiths 2022-11-15 14:59:43 +0000
  • 248ecdb55b Merge branch 'CW-1044' into 'dev' Sarah Griffiths 2022-11-08 18:07:49 +0000
  • 0758f4ab51 demo data de Sarah Griffiths 2022-11-08 18:07:44 +0000
  • acfad92017 Merge branch 'fix_sha' into 'dev' Neil Horner 2022-10-07 12:59:19 +0000
  • d537d7b33f Template changes Neil Horner 2022-10-07 12:59:18 +0000
  • c8b474ef1a Merge branch 'version_bump' into 'dev' Neil Horner 2022-08-24 13:28:43 +0000
  • d8834b7573 Verison bump Neil Horner 2022-08-24 11:38:20 +0100
  • 835385e6af Merge branch '649-b' into 'dev' Neil Horner 2022-08-23 19:15:47 +0000
  • c6b6121491 CW-649 Sarah Griffiths 2022-08-23 19:15:46 +0000
  • b140d3791e Merge branch 'transcript_table_threshold' into 'dev' Neil Horner 2022-08-08 13:48:15 +0000
  • d477a747e6 Switch isoform table thresholding to just displaying to n rows based on coverage Neil Horner 2022-08-08 13:48:15 +0000
  • fad574dacf Merge branch 'pychopper_report_move' into 'dev' Neil Horner 2022-08-04 15:46:56 +0000
  • f481daad09 Move pychopper report up to qc section Neil Horner 2022-08-04 15:46:55 +0000
  • c671a53a72 Merge branch 'disable_dag' into 'dev' Neil Horner 2022-08-02 14:57:56 +0000
  • 66a2b3aae0 Merge branch 'fusions' into 'dev' Neil Horner 2022-08-01 19:07:20 +0000
  • e63cc73b6c Fusions Neil Horner 2022-08-01 19:07:20 +0000
  • d6f76de4f4 Update nextflow.config Neil Horner 2022-08-01 16:13:32 +0000
  • 3614a1158a Merge branch 'fusions' into 'dev' Neil Horner 2022-08-01 12:01:01 +0000
  • 956c80573a Fusions Neil Horner 2022-08-01 12:01:01 +0000
  • be28906ab2 Merge branch 'CW-816-add-demo-data-to-each-workflow' into 'dev' Neil Horner 2022-07-27 14:35:41 +0000
  • 7a61c04ed9 Update nextflow_schema.json Thomas Rich 2022-07-27 14:35:40 +0000
  • 23c2e96939 Merge branch 'ci_config' into 'dev' Neil Horner 2022-07-26 09:54:32 +0000
  • f01b879be9 nf-core lint fixes Neil Horner 2022-07-26 09:54:32 +0000
  • 619fe5bef5 Merge branch 'metamap-fastqingress' into 'dev' Matt Parker 2022-07-21 14:30:58 +0000
  • 0f38613c6a metamap-fastqingress Matt Parker 2022-07-21 12:28:45 +0100
  • 63d1d894ee Merge branch 'fq2fa' into 'dev' Chris Wright 2022-07-14 09:08:45 +0000
  • 1ab5e2744c Skip fastq>a conversion Chris Wright 2022-07-14 09:08:44 +0000
  • 3efcf30a34 Merge branch 'CW-790' into 'dev' Neil Horner 2022-07-07 19:14:52 +0000
  • fa1818a81d template updates Sarah Griffiths 2022-07-07 19:14:52 +0000
  • b44ec7d98d Merge branch 'epi2melabs_pychopper' into 'dev' Neil Horner 2022-06-01 12:08:00 +0000
  • d97e84cdc1 Epi2melabs pychopper Neil Horner 2022-06-01 12:08:00 +0000
  • 2f2130b443 Merge branch 'ignore-wf' into 'dev' Matt Parker 2022-05-26 11:36:19 +0000
  • e9d750bcee ignore wf param Matt Parker 2022-05-26 10:40:51 +0100
  • b7efda8e16 Merge branch 'new-ci-rules' into 'dev' Matt Parker 2022-05-26 09:33:45 +0000
  • 79a4bec16d Zero hour 9:00 a.m. Matt Parker 2022-05-26 08:27:38 +0100
  • ebf814b4e2 Merge branch 'gh_8' into 'dev' Neil Horner 2022-04-11 15:08:47 +0000
  • 3b69e64c4f Github issues Neil Horner 2022-04-11 15:08:47 +0000
  • 00255c86f7 Merge branch 'docs' into 'dev' Neil Horner 2022-04-08 16:33:50 +0000
  • e2f290b415 New docs format Neil Horner 2022-04-08 16:33:50 +0000
  • b4fac77b11 Merge branch 'gh#8' into 'dev' Neil Horner 2022-04-07 12:57:38 +0000
  • 39f478ceef Empty dataframe bug Neil Horner 2022-04-07 12:57:38 +0000
  • 0ac1054064 Merge branch 'fnames' into 'dev' Neil Horner 2022-04-06 09:45:26 +0000
  • 07275010c0 Fnames Neil Horner 2022-04-06 09:45:25 +0000
  • 63c4b5c7a5 Merge branch 'direct_rna' into 'dev' Neil Horner 2022-04-05 18:04:17 +0000
  • c2a0f8dc21 Re-add ability to do direct RNA Neil Horner 2022-04-05 18:04:16 +0000
  • 7dfea725a0 Merge branch 'clv0.1.1' into 'dev' Neil Horner 2022-03-02 21:56:41 +0000
  • 4ddc1f16ab bump CHANGELOG version Neil Horner 2022-03-02 19:50:29 +0000
  • 778b769a9b Merge branch 'fix_output' into 'dev' Neil Horner 2022-03-02 15:23:49 +0000
  • f45fa8f2f2 Add to output process Neil Horner 2022-03-02 15:08:06 +0000
  • 0d3bd221f0 Merge branch 'post-cw460' into 'dev' Neil Horner 2022-03-02 14:15:39 +0000
  • 4d91b738e1 Post cw460 Neil Horner 2022-03-02 14:15:39 +0000
  • 61573e1117 Merge branch 'cw-460' into 'dev' Neil Horner 2022-03-02 11:34:22 +0000
  • 03b8ba51f6 Denovo bug fixes Neil Horner 2022-03-02 11:34:21 +0000
  • b56cec9994 Merge branch 'table_to_aplanat' into 'dev' Neil Horner 2022-02-28 14:17:46 +0000