kfukuta/wf-transcriptomes-v202
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Commit Graph

  • 7e33eb2c3b Moved fiterable table into aplanat and general tidy up Neil Horner 2022-02-28 14:17:46 +0000
  • 8b1cc95433 Merge branch 'schema_split' into 'dev' Neil Horner 2022-02-23 14:58:39 +0000
  • 76fd8f9c81 Seperated out the params into logical sections Neil Horner 2022-02-23 14:58:39 +0000
  • 4782a1473c Merge branch 'release_0.1.0_fix' into 'dev' Neil Horner 2022-02-07 14:24:20 +0000
  • 3030ccbbdf Updated version in schema Neil Horner 2022-02-07 11:56:42 +0000
  • 4a978c1a4c Merge branch 'release_0.1.0_fix' into 'dev' Neil Horner 2022-02-07 11:44:44 +0000
  • a7568c00b7 Addded v to changelog version Neil Horner 2022-02-07 11:36:25 +0000
  • ddca3e6208 Merge branch 'denovo3' into 'dev' Neil Horner 2022-01-26 15:54:59 +0000
  • 5dfbb0f38a Merge de novo pipeline Neil Horner 2022-01-26 15:54:55 +0000
  • 391b5d5c84 Merge branch 'update-schema' into 'dev' Thomas Rich 2022-01-11 16:04:22 +0000
  • 151ef46522 Update nextflow_schema.json Thomas Rich 2022-01-11 16:04:22 +0000
  • de3edcb31e Merge branch 'port_from_snakemake' into 'dev' Neil Horner 2021-12-08 14:34:18 +0000
  • 458ac5d274 Initial port of ref-isoforms to Nextflow Neil Horner 2021-12-08 14:34:07 +0000
  • 4a1b5cd50b Merge branch 'schema' into 'dev' Chris Wright 2021-09-29 09:51:37 +0000
  • 6f6ff11257 Merge branch 'remoteinputs' into 'dev' Chris Wright 2021-09-29 09:51:32 +0000
  • 038d399b12 Support s3 input paths Chris Wright 2021-09-28 17:11:33 +0100
  • e486b98a2c add schema Chris Wright 2021-09-28 15:11:18 +0100
  • 0d230e3930 Merge branch 'align-parameters' into 'dev' Sarah Griffiths 2021-09-10 14:19:24 +0000
  • 2be5b01cc8 align parameters Sarah Griffiths 2021-09-10 13:59:43 +0000
  • c8c79a6a36 Merge branch 'CW-244' into 'dev' Sarah Griffiths 2021-09-09 13:39:17 +0000
  • 167deee265 CW-244 optional report name Sarah Griffiths 2021-09-09 13:39:17 +0000
  • d030e654e9 Merge branch 'CW-247' into 'dev' Sarah Griffiths 2021-09-09 10:15:34 +0000
  • fb0230358f Update fastqingress.nf to give error message if no fastq files Sarah Griffiths 2021-09-08 13:42:51 +0000
  • 62425e1d89 Merge branch 'add-params-table' into 'dev' Thomas Rich 2021-08-19 14:48:39 +0000
  • fe03715e6b Merge branch 'duplicate_dockerignore_entry' into 'dev' Amber Wright 2021-07-29 13:23:39 +0000
  • 3ac6cc9768 Update .dockerignore duplicate entry Amber Wright 2021-07-29 13:18:18 +0000
  • ca5111b287 Add params table in report and process Karhide 2021-07-29 12:32:19 +0100
  • ab1706603b Bump version Chris Wright 2021-07-28 17:30:27 +0000
  • 621e910c5d Merge branch 'mamba' into 'dev' Chris Wright 2021-07-27 13:45:22 +0000
  • fcc1394600 Switch conda profile to use mamba Chris Wright 2021-07-27 11:19:11 +0100
  • 0f19083e57 Bump default BASEIMAGE Chris Wright 2021-07-26 11:18:43 +0000
  • 16f41f778f Update LICENSE Chris Wright 2021-07-26 09:51:41 +0000
  • b7fbb9d1fe Merge branch 'dev' into makesmaller Chris Wright 2021-07-23 17:39:26 +0100
  • 8afc348434 Fix version file passing Chris Wright 2021-07-23 17:34:46 +0100
  • 635b18121b Fix typos Chris Wright 2021-07-23 16:57:27 +0100
  • b61a1c0f5f Update version reporting Chris Wright 2021-07-23 16:49:32 +0100
  • eef235b8ce Optimise image size a little Chris Wright 2021-07-22 17:37:02 +0100
  • 527307b0e5 Merge branch 'stripreadme' into 'dev' Chris Wright 2021-07-22 14:35:11 +0000
  • 49ba6effd6 Merge branch 'samples' into 'dev' Chris Wright 2021-07-22 14:00:50 +0000
  • 48a985f7c3 Cut down readme to workflow particulars Chris Wright 2021-07-22 13:55:44 +0100
  • 2a1ff88cc7 add fastqingress module Chris Wright 2021-07-12 21:13:43 +0100
  • ee30d5bb7c Merge branch 'testnewmamba' into 'dev' Chris Wright 2021-06-30 16:59:26 +0000
  • feb1c5e9fd Testnewmamba Chris Wright 2021-06-30 16:59:26 +0000
  • c11f0f214b Update nextflow.config, CHANGELOG.md files Chris Wright 2021-05-17 15:21:42 +0100
  • 7e013608f9 Remove macos run Chris Wright 2021-04-29 16:16:33 +0100
  • 57ff953621 mac docker Chris Wright 2021-04-29 16:04:48 +0100
  • 0e12112439 Merge branch 'versions' into 'dev' Chris Wright 2021-04-29 14:52:21 +0100
  • c65c752277 Add version report Chris Wright 2021-04-29 14:52:21 +0100
  • 6ee6f171d8 Tidy up and add mock optional file example Chris Wright 2021-04-13 11:46:44 +0100
  • 62afff20c4 Add aws batch profile Chris Wright 2021-03-29 18:10:53 +0100
  • 36cd674fa2 Simple version bump Chris Wright 2021-03-24 13:36:58 +0000
  • d6233c33a3 prep0.0.3 Chris Wright 2021-03-23 17:34:02 +0000
  • 93d24b8fa1 Merge branch 'report' into 'dev' Chris Wright 2021-03-23 16:18:53 +0000
  • d1901bb16f rename report Chris Wright 2021-03-23 16:18:53 +0000
  • e8e584d451 Set fastq option straight Chris Wright 2021-03-19 11:21:32 +0000
  • 4a72aee687 Merge branch 'newtemp' into 'dev' Chris Wright 2021-03-17 12:19:47 +0000
  • c149382e3c Add comments to ci Chris Wright 2021-03-17 12:16:47 +0000
  • 67d98b9561 Add comments to ci Chris Wright 2021-03-17 11:28:56 +0000
  • 3f99c88a9d Clean up bin Chris Wright 2021-03-17 11:24:07 +0000
  • fba94dcd8f Switch to variable based command Chris Wright 2021-03-17 11:06:24 +0000
  • f7aa07209b Merge branch 'citemplate' into 'dev' Chris Wright 2021-03-16 17:34:15 +0000
  • 0511706888 Citemplate Chris Wright 2021-03-16 17:34:15 +0000
  • 576e25306e Update .gitlab-ci.yml Chris Wright 2021-03-16 15:37:31 +0000
  • d74cd3d048 Update .gitlab-ci.yml Chris Wright 2021-03-16 14:41:42 +0000
  • ffb895ef7e Merge branch 'citemplate' into 'dev' Chris Wright 2021-03-16 12:58:57 +0000
  • e829f60d95 Switch to ci template Chris Wright 2021-03-16 12:53:44 +0000
  • d11e57f286 Update changelog Chris Wright 2021-03-15 18:17:06 +0000
  • 99a68e4c36 Bump wfversion Chris Wright 2021-03-15 18:15:26 +0000
  • 945de8ab93 Fix prerelease checks Chris Wright 2021-03-15 18:08:53 +0000
  • f97ed4ebfb Merge branch 'checks' into 'dev' Chris Wright 2021-03-15 18:04:54 +0000
  • 68cba9efc0 fix ci Chris Wright 2021-03-15 18:04:54 +0000
  • 2d13583e6c Merge branch 'fixci' into 'dev' Chris Wright 2021-03-15 17:36:22 +0000
  • eea3040d74 fix ci Chris Wright 2021-03-15 17:36:22 +0000
  • 5df27390f0 CI semicolons Chris Wright 2021-03-15 16:36:10 +0000
  • 845bdceb7c More CI fixes Chris Wright 2021-03-15 16:32:45 +0000
  • bc2392be4b More CI fixes Chris Wright 2021-03-15 16:25:27 +0000
  • 363826f0bd Fix CI Chris Wright 2021-03-15 16:11:47 +0000
  • 28ed81d845 Fix CI Chris Wright 2021-03-15 16:07:33 +0000
  • a2a1ac2739 Merge branch 'make-prerelease' into 'dev' Chris Wright 2021-03-15 16:01:23 +0000
  • 6533b2d9fe deploy from dev branch Chris Wright 2021-03-15 15:24:54 +0000
  • e984ec361f Merge branch 'readme' into 'dev' Chris Wright 2021-03-09 17:23:54 +0000
  • 72ffce613c Standardise readme Chris Wright 2021-03-09 17:21:21 +0000
  • 3a95639952 Update nextflow.config execution stats location Chris Wright 2021-03-09 15:12:05 +0000
  • e59e0df6c6 Update main.nf to add an n to the shebang Thomas Rich 2021-03-04 09:29:55 +0000
  • b86690ea7d Do not require github master branch before first push Chris Wright 2021-03-01 12:16:04 +0000
  • 021c3a11a3 Add a changelog Chris Wright 2021-03-01 11:53:02 +0000
  • ed1fc2c9fd Add larger test data and sample report Chris Wright 2021-03-01 11:44:41 +0000
  • d79c23ada4 Merge branch 'dev' of workflow-containers/wf-template into dev Chris Wright 2021-03-01 10:33:47 +0000
  • d31dfef70c Minor edits to readme Chris Wright 2021-03-01 10:32:51 +0000
  • d95ccc2e41 Merge branch 'updates' into 'dev' Chris Wright 2021-02-24 17:45:39 +0000
  • 5c60ad6779 Backport additions from wf-artic Chris Wright 2021-02-24 17:45:39 +0000
  • b876c635ec Update .gitlab-ci.yml Chris Wright 2021-02-18 18:45:41 +0000
  • 55a2c4e0bc Update .gitlab-ci.yml Chris Wright 2021-02-18 18:26:37 +0000
  • 07f8415a88 Add github code push Chris Wright 2021-02-18 12:21:54 +0000
  • 37d2e6c755 add shell guards Chris Wright 2021-02-15 15:22:13 +0000
  • 1815784a89 Parameterise dockerhub namespace Chris Wright 2021-02-09 15:59:24 +0000
  • b190aabaae update container references Chris Wright 2021-02-09 15:33:58 +0000
  • 0e0a700406 Fix config Chris Wright 2021-02-04 14:40:54 +0000
  • 416b482a01 Fix config Chris Wright 2021-02-04 14:40:48 +0000
  • 50f79540a2 Update environment.yaml Chris Wright 2021-02-04 14:27:28 +0000