include:
    - project: "epi2melabs/ci-templates"
      file: "wf-containers.yaml"

.run: &run |
    ${NEXTFLOWRUN} -w ${OUTPUT}/workspace --out_dir ${OUTPUT} \
        --fastq test_data

conda-run:
    extends: .conda-run
    script:
        - *run

docker-run:
    extends: .docker-run
    script:
        - *run
        - touch ${CI_PROJECT_DIR}/success