name: epi2melabs-wf-isoforms
channels:
    - epi2melabs
    - bioconda
    - conda-forge
    - defaults
dependencies:
    - python==3.8.*
    - aplanat >=0.5.0
    - epi2melabs
    - minimap2
    - samtools
    - bedtools
    - pychopper
    - pandas
    - seaborn
    - requests
    - gffread
    - seqkit
    - csvtk
    - stringtie==2.1.1
    - gffcompare
    - curl
    - pysam
    - spoa==3.4.0
    - fastcat
    - isonclust2