name: epi2melabs-wf-isoforms-test
channels:
    - epi2melabs
    - bioconda
    - conda-forge
    - defaults
dependencies:
    - python==3.8.*
    - aplanat >=0.6.2
    - epi2melabs
    - minimap2 ==2.24
    - samtools ==1.14
    - bedtools ==2.30.0
    - pychopper==2.5.0
    - pandas==1.3.5
    - gffread==0.12.7
    - gffcompare==0.11.2
    - gffutils=0.10.1
    - seqkit==2.1.0
    - stringtie==2.1.1
    - curl
    - pysam==0.17.0
    - racon==1.4.20
    - spoa==3.4.0
    - fastcat==0.4.10
    - isonclust2==2.3
    - parallel
    - scikit-learn==1.0.2