repos:
  - repo: local
    hooks:
      - id: docs_schema
        name: docs_schema
        entry: parse_docs -p docs -e .md -s intro links -oj nextflow_schema.json
        language: python
        always_run: true
        pass_filenames: false
        additional_dependencies:
          - epi2melabs
      - id: docs_readme
        name: docs_readme
        entry: parse_docs -p docs -e .md -s header intro quickstart links -ot README.md
        language: python
        always_run: true
        pass_filenames: false
        additional_dependencies:
          - epi2melabs
  - repo: https://gitlab.com/pycqa/flake8
    rev: 3.7.9
    hooks:
      - id: flake8
        additional_dependencies:
          - flake8-import-order==0.18.1
          - flake8-docstrings==1.6.0
          - flake8-rst-docstrings==0.2.5
          - flake8-forbid-visual-indent==0.0.2
        entry: flake8 bin --import-order-style google --statistics