process { withLabel:containerCPU { container = 'workflow-template:latest' } } profiles { // the "standard" profile is used implicitely by nextflow // if no other profile is given on the CLI standard { docker { enabled = true // this ensures container is run as host user and group, but // also adds host user to the within-container group runOptions = "--user \$(id -u):\$(id -g) --group-add 100" } } }