34 lines
1.2 KiB
YAML
34 lines
1.2 KiB
YAML
repos:
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- repo: local
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hooks:
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- id: docs_readme
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name: docs_readme
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entry: parse_docs -p docs -e .md -s 01_brief_description 02_introduction 03_compute_requirements 04_install_and_run 05_related_protocols 06_input_example 06_input_parameters 07_outputs 08_pipeline_overview 09_troubleshooting 10_FAQ 11_other -ot README.md -od output_definition.json -ns nextflow_schema.json
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language: python
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always_run: true
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pass_filenames: false
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additional_dependencies:
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- epi2melabs==0.0.57
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- repo: https://github.com/pycqa/flake8
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rev: 5.0.4
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hooks:
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- id: flake8
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pass_filenames: false
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additional_dependencies:
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- flake8-rst-docstrings
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- flake8-docstrings
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- flake8-import-order
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- flake8-forbid-visual-indent
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- pep8-naming
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- flake8-no-types
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- flake8-builtins
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- flake8-absolute-import
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- flake8-print
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args: [
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"bin",
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"--import-order-style=google",
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"--statistics",
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"--max-line-length=88",
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"--per-file-ignores=bin/workflow_glue/models/*:NT001",
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]
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