45 lines
1.2 KiB
Plaintext
45 lines
1.2 KiB
Plaintext
//
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// Notes to End Users.
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//
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// The workflow should run without editing this configuration file,
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// however there may be instances in which you wish to edit this
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// file for compute performance or other reasons. Please see:
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//
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// https://nextflow.io/docs/latest/config.html#configuration
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//
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// for further help editing this file.
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profiles {
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// the "standard" profile is used implicitely by nextflow
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// if no other profile is given on the CLI
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standard {
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docker {
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enabled = true
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// this ensures container is run as host user and group, but
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// also adds host user to the within-container group
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runOptions = "--user \$(id -u):\$(id -g) --group-add 100"
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}
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process {
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withLabel:default {
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container = 'workflow-template:latest'
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}
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}
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}
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// profile using conda environments rather than docker
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// containers
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conda {
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docker {
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enabled = false
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}
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process {
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withLabel:default {
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conda = "environment.yaml"
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}
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}
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conda {
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cacheDir = ""
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}
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}
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}
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