18 lines
430 B
YAML
18 lines
430 B
YAML
include:
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- project: "epi2melabs/ci-templates"
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file: "wf-containers.yaml"
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variables:
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RUN: "./nextflow run main.nf -w ${OUTPUT}/workspace --out_dir ${OUTPUT} --fastq test_data/reads.fq.gz"
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conda-run:
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extends: .conda-run
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script:
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- "${RUN} -profile conda"
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docker-run:
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extends: .docker-run
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script:
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- "${RUN} -profile standard --wfversion latest"
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- touch $CI_PROJECT_DIR/success
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